Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSS96_RS14920 Genome accession   NZ_CP151980
Coordinates   2876202..2876843 (-) Length   213 a.a.
NCBI ID   WP_101676435.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1336     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2871202..2881843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS96_RS14885 (NSS96_14885) - 2872330..2872761 (+) 432 WP_101676434.1 Na(+)/H(+) antiporter subunit B -
  NSS96_RS14890 (NSS96_14890) - 2872761..2873102 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  NSS96_RS14895 (NSS96_14895) - 2873095..2874573 (+) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  NSS96_RS14900 (NSS96_14900) - 2874580..2875059 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  NSS96_RS14905 (NSS96_14905) - 2875059..2875340 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  NSS96_RS14910 (NSS96_14910) mnhG 2875324..2875698 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  NSS96_RS14915 (NSS96_14915) - 2875789..2876178 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  NSS96_RS14920 (NSS96_14920) comA 2876202..2876843 (-) 642 WP_101676435.1 response regulator transcription factor Regulator
  NSS96_RS14925 (NSS96_14925) comP 2876924..2879215 (-) 2292 WP_101676436.1 ATP-binding protein Regulator
  NSS96_RS14930 (NSS96_14930) comX 2879229..2879402 (-) 174 WP_046313343.1 competence pheromone ComX -
  NSS96_RS14935 (NSS96_14935) - 2879380..2880303 (-) 924 WP_065215228.1 polyprenyl synthetase family protein -
  NSS96_RS14940 (NSS96_14940) degQ 2880455..2880595 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NSS96_RS14945 (NSS96_14945) - 2881101..2881457 (+) 357 WP_101676437.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24089.50 Da        Isoelectric Point: 4.6344

>NTDB_id=983203 NSS96_RS14920 WP_101676435.1 2876202..2876843(-) (comA) [Bacillus sp. FSL W7-1336]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIECIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=983203 NSS96_RS14920 WP_101676435.1 2876202..2876843(-) (comA) [Bacillus sp. FSL W7-1336]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATGCATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment