NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	ACN3VN_RS10795	Genome accession	NZ_CP183396
Coordinates	2341304..2342167 (-)	Length	287 a.a.
NCBI ID	WP_058569265.1	Uniprot ID	-
Organism	Xylella fastidiosa strain CFBP8074
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2336304..2347167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN3VN_RS10775 (ACN3VN_10775)	rimK	2336845..2337709 (+)	865	Protein_2106	30S ribosomal protein S6--L-glutamate ligase	-
ACN3VN_RS10780 (ACN3VN_10780)	-	2338395..2339072 (+)	678	WP_010894955.1	response regulator transcription factor	-
ACN3VN_RS10785 (ACN3VN_10785)	-	2339065..2340402 (+)	1338	WP_023908103.1	sensor histidine kinase	-
ACN3VN_RS10790 (ACN3VN_10790)	coaE	2340669..2341292 (-)	624	WP_046418843.1	dephospho-CoA kinase	-
ACN3VN_RS10795 (ACN3VN_10795)	pilD	2341304..2342167 (-)	864	WP_058569265.1	prepilin peptidase	Machinery gene
ACN3VN_RS10800 (ACN3VN_10800)	pilC	2342174..2343376 (-)	1203	WP_011098309.1	type II secretion system F family protein	Machinery gene
ACN3VN_RS10805 (ACN3VN_10805)	pilA/pilAI	2343817..2344266 (+)	450	WP_058569266.1	pilin	Machinery gene
ACN3VN_RS10810 (ACN3VN_10810)	-	2344531..2344734 (-)	204	WP_419653900.1	hypothetical protein	-
ACN3VN_RS10815 (ACN3VN_10815)	-	2345239..2345367 (-)	129	WP_267885865.1	hypothetical protein	-
ACN3VN_RS10820 (ACN3VN_10820)	pilA/pilAI	2345568..2346008 (+)	441	WP_058569267.1	pilin	Machinery gene

Sequence

Protein

Download Length: 287 a.a. Molecular weight: 31746.87 Da Isoelectric Point: 8.6709

                                >NTDB_id=983202 ACN3VN_RS10795 WP_058569265.1 2341304..2342167(-) (pilD) [Xylella fastidiosa strain CFBP8074]

MAFLDQHPGLGYPLASGLGLLLGSFLNVVILRLPRRLEWQWKRDAREILEMPDIYDPPPPGIVVEPSHDPVTGDRLKWWE

NIPVLSWLLLRGRSRYSGKSISLQYPLVELLTCLLVLASVWRFGFGWHGFGAIVFSCFLVALAGIDLRTRLLPDQLTLML

MWLGLIGSADNLFMAAKPALLGAVVGYLSLWIVAALFKLIFNKEGMGHGDFKMLAALGAWCGLKGILPIILISSLAGVVL

GSVWLVVRGHNRTTMIPFGPYLAVGGWIVFFFGDQIIHAYLELLSIG

Nucleotide

Download Length: 864 bp

                                >NTDB_id=983202 ACN3VN_RS10795 WP_058569265.1 2341304..2342167(-) (pilD) [Xylella fastidiosa strain CFBP8074]

ATGGCATTTCTTGACCAGCACCCCGGTCTCGGCTATCCCCTTGCGTCCGGTTTGGGGTTGTTGCTTGGTAGTTTTCTCAA

TGTGGTGATCCTGCGTTTGCCGCGCCGTTTGGAATGGCAATGGAAGCGCGATGCGCGCGAAATCCTGGAGATGCCGGACA

TTTATGATCCGCCACCACCGGGAATTGTGGTCGAGCCTTCCCACGATCCAGTGACTGGTGATCGGTTGAAGTGGTGGGAA

AACATTCCGGTGCTTAGCTGGTTGTTGCTACGTGGACGTTCGCGTTACAGCGGCAAGTCAATCTCGTTGCAGTATCCGTT

GGTCGAATTGCTGACTTGCCTGCTGGTGCTGGCCAGTGTTTGGCGTTTTGGATTCGGTTGGCATGGTTTTGGGGCAATTG

TGTTCAGTTGTTTCCTGGTTGCGTTGGCTGGGATTGATTTGCGTACTCGGCTCTTACCTGACCAGTTAACTTTAATGCTC

ATGTGGCTGGGTTTGATTGGATCGGCGGATAACTTGTTTATGGCAGCCAAACCTGCGTTATTGGGGGCTGTAGTTGGTTA

TTTATCTCTGTGGATTGTGGCGGCGTTGTTCAAACTGATCTTTAACAAGGAAGGGATGGGCCATGGTGACTTCAAAATGC

TGGCCGCGCTTGGGGCATGGTGTGGGTTGAAGGGTATTCTCCCGATCATTTTGATTTCATCACTGGCTGGAGTGGTATTG

GGCTCCGTTTGGCTTGTTGTGCGTGGTCATAACCGTACGACGATGATTCCGTTTGGACCTTATCTGGCAGTTGGTGGATG

GATCGTGTTCTTTTTCGGCGATCAGATCATCCATGCTTATCTGGAGCTATTAAGTATCGGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(133-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	42.403	98.606	0.418
pilD	Vibrio campbellii strain DS40M4	42.105	99.303	0.418
pilD	Neisseria gonorrhoeae MS11	44.03	93.38	0.411
pilD	Acinetobacter nosocomialis M2	41.696	98.606	0.411
pilD	Acinetobacter baumannii D1279779	41.696	98.606	0.411

Detailed information NTG0983202