Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSQ51_RS15275 Genome accession   NZ_CP151966
Coordinates   2877712..2878071 (-) Length   119 a.a.
NCBI ID   WP_183084371.1    Uniprot ID   -
Organism   Geobacillus sp. FSL K6-0789     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2872712..2883071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ51_RS15255 (NSQ51_15255) - 2874069..2874848 (-) 780 WP_121650008.1 hypothetical protein -
  NSQ51_RS15260 (NSQ51_15260) - 2874894..2876246 (-) 1353 WP_121650009.1 peptidoglycan-binding protein -
  NSQ51_RS15265 (NSQ51_15265) - 2876401..2876910 (-) 510 WP_033013768.1 hypothetical protein -
  NSQ51_RS15270 (NSQ51_15270) - 2877120..2877530 (+) 411 WP_049624694.1 helix-turn-helix domain-containing protein -
  NSQ51_RS15275 (NSQ51_15275) ssbB 2877712..2878071 (-) 360 WP_183084371.1 single-stranded DNA-binding protein Machinery gene
  NSQ51_RS15280 (NSQ51_15280) - 2878343..2878780 (+) 438 WP_033013755.1 YwpF-like family protein -
  NSQ51_RS15285 (NSQ51_15285) - 2878992..2879654 (-) 663 WP_033013754.1 class D sortase -
  NSQ51_RS15290 (NSQ51_15290) - 2879679..2880605 (-) 927 WP_049625968.1 processed acidic surface protein -
  NSQ51_RS15295 (NSQ51_15295) - 2880986..2882362 (-) 1377 WP_049624691.1 aspartate kinase -
  NSQ51_RS15300 (NSQ51_15300) - 2882496..2882654 (-) 159 WP_155266779.1 hypothetical protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13476.41 Da        Isoelectric Point: 10.1006

>NTDB_id=982513 NSQ51_RS15275 WP_183084371.1 2877712..2878071(-) (ssbB) [Geobacillus sp. FSL K6-0789]
MRRRMVNQVVLVGRLTKDPELRYTAEGAAVTTVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDNKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=982513 NSQ51_RS15275 WP_183084371.1 2877712..2878071(-) (ssbB) [Geobacillus sp. FSL K6-0789]
ATGCGCCGGCGTATGGTCAATCAAGTGGTGCTTGTCGGGCGGTTGACGAAAGACCCGGAGCTCCGTTACACAGCCGAAGG
AGCAGCCGTGACGACCGTCACCTTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGAGGGATTGATGCCGATTTCGTTC
CATGCGTCTTATGGCGGAAAACAGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAATAAGGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.961

86.555

0.588
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

87.395

0.571
  ssb Latilactobacillus sakei subsp. sakei 23K

60

88.235

0.529
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.524

88.235

0.437
  ssbA Streptococcus mutans UA159

46.667

88.235

0.412
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.714

88.235

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

44.762

88.235

0.395
  ssbB/cilA Streptococcus mitis SK321

44.762

88.235

0.395
  ssbB/cilA Streptococcus pneumoniae D39

44.762

88.235

0.395
  ssbB/cilA Streptococcus pneumoniae R6

44.762

88.235

0.395
  ssbB Lactococcus lactis subsp. cremoris KW2

42.308

87.395

0.37

Multiple sequence alignment