Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WFZ83_RS13330 Genome accession   NZ_CP151867
Coordinates   2535852..2536208 (-) Length   118 a.a.
NCBI ID   WP_342376814.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain YB6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2530852..2541208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFZ83_RS13305 argS 2530885..2532573 (-) 1689 WP_087931720.1 arginine--tRNA ligase -
  WFZ83_RS13310 - 2532873..2533649 (-) 777 WP_087931719.1 class I SAM-dependent methyltransferase -
  WFZ83_RS13315 - 2533699..2534133 (-) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  WFZ83_RS13320 - 2534217..2534600 (-) 384 WP_087931718.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  WFZ83_RS13325 - 2534604..2535731 (-) 1128 WP_087931717.1 conserved virulence factor C family protein -
  WFZ83_RS13330 ssbA 2535852..2536208 (-) 357 WP_342376814.1 single-stranded DNA-binding protein Machinery gene
  WFZ83_RS13335 - 2536336..2536857 (-) 522 WP_086407995.1 hypothetical protein -
  WFZ83_RS13340 - 2537171..2537407 (+) 237 WP_000021281.1 helix-turn-helix transcriptional regulator -
  WFZ83_RS13345 - 2538024..2538449 (-) 426 WP_098923846.1 tyrosine-protein phosphatase -
  WFZ83_RS13350 - 2538476..2538757 (-) 282 WP_001027741.1 iron-sulfur cluster biosynthesis family protein -
  WFZ83_RS13355 arsA 2538796..2540556 (-) 1761 WP_342376825.1 arsenical pump-driving ATPase -
  WFZ83_RS13360 arsD 2540575..2540934 (-) 360 WP_322471300.1 arsenite efflux transporter metallochaperone ArsD -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13599.46 Da        Isoelectric Point: 9.4105

>NTDB_id=981143 WFZ83_RS13330 WP_342376814.1 2535852..2536208(-) (ssbA) [Bacillus thuringiensis strain YB6]
MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRDFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTRN
YEGDKGKRTYITEVMIESITFLEKRREDASKKDGTWGN

Nucleotide


Download         Length: 357 bp        

>NTDB_id=981143 WFZ83_RS13330 WP_342376814.1 2535852..2536208(-) (ssbA) [Bacillus thuringiensis strain YB6]
TTGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGTGTTGCATATGCACG
AGTATGTGTTGCAGTGAATAGGGATTTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTATGGC
GAAGATCAGCTGAGAATGTAACTGAATATTGCACGAAAGGGTCTCTTGTTGGAATTACTGGACGTATTCATACGAGGAAT
TACGAGGGTGATAAAGGAAAGAGGACATATATAACTGAAGTTATGATTGAAAGTATTACCTTTTTGGAGAAAAGGCGGGA
GGATGCATCAAAAAAAGATGGGACTTGGGGGAATTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.095

88.983

0.517
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.351

94.068

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

52.381

88.983

0.466
  ssbB Lactococcus lactis subsp. cremoris KW2

44.828

98.305

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.857

94.915

0.407
  ssbA Streptococcus mutans UA159

42.105

96.61

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.964

94.915

0.398
  ssbB/cilA Streptococcus pneumoniae D39

41.071

94.915

0.39
  ssbB/cilA Streptococcus pneumoniae R6

41.071

94.915

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

41.071

94.915

0.39
  ssbB/cilA Streptococcus mitis SK321

41.071

94.915

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

40.179

94.915

0.381

Multiple sequence alignment