Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   R8613_RS09430 Genome accession   NZ_AP026919
Coordinates   1806139..1806534 (-) Length   131 a.a.
NCBI ID   WP_000282442.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1801139..1811534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8613_RS09405 (PC0012_18230) - 1801482..1801820 (-) 339 WP_001809290.1 helix-turn-helix transcriptional regulator -
  R8613_RS09410 (PC0012_18240) - 1801833..1802606 (-) 774 WP_000566040.1 class I SAM-dependent methyltransferase -
  R8613_RS09415 - 1803054..1803809 (-) 756 Protein_1850 epoxyqueuosine reductase QueH -
  R8613_RS09420 (PC0012_18270) groL 1803947..1805569 (-) 1623 WP_000031573.1 chaperonin GroEL -
  R8613_RS09425 (PC0012_18280) groES 1805585..1805869 (-) 285 WP_000917330.1 co-chaperone GroES -
  R8613_RS09430 (PC0012_18290) ssbB/cilA 1806139..1806534 (-) 396 WP_000282442.1 single-stranded DNA-binding protein Machinery gene
  R8613_RS09435 (PC0012_18300) - 1806612..1807373 (-) 762 WP_219565729.1 SDR family NAD(P)-dependent oxidoreductase -
  R8613_RS09440 (PC0012_18310) ytpR 1807406..1808032 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  R8613_RS09445 (PC0012_18320) - 1808048..1808365 (-) 318 WP_000615767.1 thioredoxin family protein -
  R8613_RS09450 (PC0012_18330) - 1808362..1808661 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  R8613_RS09455 - 1808859..1809056 (-) 198 Protein_1858 N-acetylmuramoyl-L-alanine amidase family protein -
  R8613_RS09460 (PC0012_18340) - 1809300..1809974 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  R8613_RS09465 (PC0012_18350) - 1809980..1810426 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R8613_RS09470 - 1810540..1811043 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  R8613_RS09475 (PC0012_18360) - 1811040..1811402 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14907.85 Da        Isoelectric Point: 5.9409

>NTDB_id=97892 R8613_RS09430 WP_000282442.1 1806139..1806534(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700012]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=97892 R8613_RS09430 WP_000282442.1 1806139..1806534(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700012]
ATGTATAATAAAGTTATCTTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGGCTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTAACTGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae D39

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae R6

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

99.237

100

0.992
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment