Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   AADV58_RS03055 Genome accession   NZ_CP151406
Coordinates   626914..627189 (+) Length   91 a.a.
NCBI ID   WP_028993626.1    Uniprot ID   -
Organism   Azonexus hydrophilus strain NCP973     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621914..632189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV58_RS03030 (AADV58_03030) - 623096..623656 (+) 561 WP_298395020.1 YqgE/AlgH family protein -
  AADV58_RS03035 (AADV58_03035) ruvX 623656..624081 (+) 426 WP_341744048.1 Holliday junction resolvase RuvX -
  AADV58_RS03040 (AADV58_03040) pyrR 624068..624574 (+) 507 WP_028993629.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AADV58_RS03045 (AADV58_03045) - 624567..625526 (+) 960 WP_028993628.1 aspartate carbamoyltransferase catalytic subunit -
  AADV58_RS03050 (AADV58_03050) - 625528..626772 (+) 1245 WP_341744049.1 dihydroorotase -
  AADV58_RS03055 (AADV58_03055) comE 626914..627189 (+) 276 WP_028993626.1 helix-hairpin-helix domain-containing protein Machinery gene
  AADV58_RS03060 (AADV58_03060) - 627214..627504 (-) 291 WP_028993625.1 DUF167 domain-containing protein -
  AADV58_RS03065 (AADV58_03065) - 627504..628037 (-) 534 WP_298394755.1 YggT family protein -
  AADV58_RS03070 (AADV58_03070) proC 628037..628852 (-) 816 WP_028993623.1 pyrroline-5-carboxylate reductase -
  AADV58_RS03075 (AADV58_03075) - 628849..629541 (-) 693 WP_028993622.1 YggS family pyridoxal phosphate-dependent enzyme -
  AADV58_RS03080 (AADV58_03080) pilT 629597..630640 (+) 1044 WP_028993621.1 type IV pilus twitching motility protein PilT Machinery gene
  AADV58_RS03085 (AADV58_03085) pilU 630668..631804 (+) 1137 WP_028993620.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 9529.12 Da        Isoelectric Point: 10.7107

>NTDB_id=976438 AADV58_RS03055 WP_028993626.1 626914..627189(+) (comE) [Azonexus hydrophilus strain NCP973]
MKRITTLLFGMLAGIGMAMAAVNINTATEAELDAVKGIGPGKARAIVEHRDKNGPFKSVDDLTNVKGFGKKSIDKLRSEL
TTGAASSPAKK

Nucleotide


Download         Length: 276 bp        

>NTDB_id=976438 AADV58_RS03055 WP_028993626.1 626914..627189(+) (comE) [Azonexus hydrophilus strain NCP973]
ATGAAACGCATTACCACCCTGTTGTTCGGCATGCTGGCAGGCATCGGCATGGCGATGGCCGCCGTCAATATCAATACGGC
GACCGAGGCGGAACTGGACGCGGTCAAGGGCATCGGCCCGGGCAAGGCGCGGGCGATTGTCGAACACCGGGACAAGAACG
GCCCGTTCAAGTCGGTTGACGATCTGACGAACGTCAAAGGCTTCGGCAAGAAGAGTATCGACAAGCTGCGGTCGGAATTG
ACGACCGGCGCGGCAAGCAGCCCGGCCAAGAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

51.163

94.505

0.484
  comE Neisseria gonorrhoeae MS11

51.163

94.505

0.484
  comE Neisseria gonorrhoeae MS11

51.163

94.505

0.484
  comE Neisseria gonorrhoeae MS11

51.163

94.505

0.484
  comEA Vibrio parahaemolyticus RIMD 2210633

42.529

95.604

0.407
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.679

89.011

0.407
  comEA Vibrio campbellii strain DS40M4

38.636

96.703

0.374
  comEA Staphylococcus aureus N315

55

65.934

0.363
  comEA Staphylococcus aureus MW2

55

65.934

0.363
  comEA Acinetobacter baylyi ADP1

55.932

64.835

0.363

Multiple sequence alignment