Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AABC73_RS24280 Genome accession   NZ_CP151076
Coordinates   5238297..5239514 (+) Length   405 a.a.
NCBI ID   WP_341521290.1    Uniprot ID   -
Organism   Pseudomonas sp. G.S.17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5233297..5244514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS24250 (AABC73_24260) - 5234107..5234874 (+) 768 WP_341521285.1 WecB/TagA/CpsF family glycosyltransferase -
  AABC73_RS24255 (AABC73_24265) - 5235087..5235380 (+) 294 WP_341521286.1 hypothetical protein -
  AABC73_RS24260 (AABC73_24270) - 5235431..5235703 (+) 273 WP_341521287.1 hypothetical protein -
  AABC73_RS24270 (AABC73_24280) pilA/pilA1 5235965..5236372 (-) 408 WP_341521288.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AABC73_RS24275 (AABC73_24285) pilB 5236597..5238294 (+) 1698 WP_341521289.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AABC73_RS24280 (AABC73_24290) pilC 5238297..5239514 (+) 1218 WP_341521290.1 type II secretion system F family protein Machinery gene
  AABC73_RS24285 (AABC73_24295) pilD 5239517..5240389 (+) 873 WP_341521291.1 A24 family peptidase Machinery gene
  AABC73_RS24290 (AABC73_24300) coaE 5240386..5241009 (+) 624 WP_341521292.1 dephospho-CoA kinase -
  AABC73_RS24295 (AABC73_24305) yacG 5241006..5241209 (+) 204 WP_065836197.1 DNA gyrase inhibitor YacG -
  AABC73_RS24300 (AABC73_24310) - 5241232..5241927 (-) 696 WP_341521293.1 energy-coupling factor ABC transporter permease -
  AABC73_RS24305 (AABC73_24315) - 5241924..5242391 (-) 468 WP_065836195.1 hypothetical protein -
  AABC73_RS24310 (AABC73_24320) - 5242633..5243262 (+) 630 WP_020291059.1 DUF1780 domain-containing protein -
  AABC73_RS24315 (AABC73_24325) - 5243259..5243768 (+) 510 WP_341521294.1 MOSC domain-containing protein -
  AABC73_RS24320 (AABC73_24330) - 5243809..5243982 (+) 174 WP_341521295.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44097.02 Da        Isoelectric Point: 9.9826

>NTDB_id=974700 AABC73_RS24280 WP_341521290.1 5238297..5239514(+) (pilC) [Pseudomonas sp. G.S.17]
MASKAVKVGTYTWEGTDKKGTKMTGELTGHNVALIKAQLRKQGINPLKVRKKSVSIFGEGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIIEGADNPNMRKLINDVKQEVAAGNSFATALRQKPQYFDELYCSLVDAGEQAGALETLLDRVATYKEKT
EALKAKIKKAMTYPTAVLVVAFIVSGILLIKVVPQFQSVFSSFGAELPAFTQMVVSLSNVVQEWWLIILGLMVAAFFLFK
RGYKQSVKLRDSIDRGLLKVPVIGPLLFKSAVARFARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVLKVRQDVSTGM
QLNFSMRSVGVFPSLAIQMTAIGEESGALDNMLDKVATYYEEEVDNMVDSLTSLMEPMIMAVLGIIVGGLVIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=974700 AABC73_RS24280 WP_341521290.1 5238297..5239514(+) (pilC) [Pseudomonas sp. G.S.17]
ATGGCCAGCAAAGCAGTAAAAGTCGGCACGTACACATGGGAAGGCACGGACAAGAAAGGCACGAAAATGACCGGCGAACT
GACCGGGCATAATGTTGCCTTGATTAAAGCGCAGTTGCGCAAACAAGGTATCAACCCGTTAAAAGTTCGCAAAAAATCCG
TCTCGATCTTTGGCGAGGGGAAAAAAATAAAACCGTTGGACATCGCTTTTTTCTCACGGCAAATGGCGACGATGATGAAG
GCCGGCGTGCCGTTGCTCCAGTCCTTCGACATCATCATTGAAGGCGCCGACAATCCGAACATGCGCAAGTTGATCAACGA
CGTCAAACAGGAAGTTGCTGCTGGCAATAGCTTCGCCACCGCGCTGAGGCAAAAGCCGCAATATTTCGATGAGTTGTATT
GCAGCCTTGTAGATGCAGGTGAGCAGGCTGGTGCCTTGGAAACCCTGCTGGACCGAGTCGCTACTTATAAAGAAAAGACC
GAAGCACTCAAGGCTAAGATCAAGAAAGCAATGACCTATCCGACTGCCGTATTGGTTGTTGCATTCATTGTTTCCGGTAT
CCTTCTGATTAAAGTTGTGCCGCAGTTTCAATCTGTGTTCTCGAGTTTTGGAGCAGAGTTACCAGCGTTTACCCAAATGG
TCGTCAGCCTTTCCAATGTTGTTCAGGAATGGTGGCTAATAATTCTAGGCTTGATGGTTGCAGCTTTCTTTCTATTCAAA
CGCGGCTACAAGCAATCGGTAAAACTACGCGACAGTATTGATCGTGGATTGCTGAAAGTACCAGTAATCGGGCCTCTGCT
CTTCAAGTCTGCAGTTGCCCGTTTTGCGCGGACCCTTGCGACTACATTCGCTGCGGGCGTGCCGCTGGTAGAAGCACTGG
ACTCCGTGGCGGGCGCAACGGGTAATGTTGTATTCCGGAATGCTGTATTGAAAGTCCGCCAAGACGTTTCGACAGGTATG
CAGCTCAACTTTTCAATGCGTTCCGTCGGCGTGTTCCCCAGCCTGGCGATACAAATGACCGCGATCGGTGAAGAGTCCGG
TGCGCTGGATAACATGCTCGATAAGGTTGCCACTTACTATGAAGAGGAGGTGGATAACATGGTAGACAGCCTGACCAGCC
TGATGGAACCCATGATAATGGCGGTCCTTGGGATCATAGTCGGCGGCCTGGTTATCGCCATGTACTTGCCTATCTTCCAG
CTCGGAAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.58

100

0.736
  pilC Acinetobacter baylyi ADP1

60.391

100

0.61
  pilC Acinetobacter baumannii D1279779

60

100

0.6
  pilC Legionella pneumophila strain ERS1305867

53.401

98.025

0.523
  pilG Neisseria gonorrhoeae MS11

42.716

100

0.427
  pilG Neisseria meningitidis 44/76-A

42.184

99.506

0.42
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

39.5

98.765

0.39

Multiple sequence alignment