Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AABC73_RS24285 | Genome accession | NZ_CP151076 |
| Coordinates | 5239517..5240389 (+) | Length | 290 a.a. |
| NCBI ID | WP_341521291.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. G.S.17 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5234517..5245389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABC73_RS24255 (AABC73_24265) | - | 5235087..5235380 (+) | 294 | WP_341521286.1 | hypothetical protein | - |
| AABC73_RS24260 (AABC73_24270) | - | 5235431..5235703 (+) | 273 | WP_341521287.1 | hypothetical protein | - |
| AABC73_RS24270 (AABC73_24280) | pilA/pilA1 | 5235965..5236372 (-) | 408 | WP_341521288.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| AABC73_RS24275 (AABC73_24285) | pilB | 5236597..5238294 (+) | 1698 | WP_341521289.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AABC73_RS24280 (AABC73_24290) | pilC | 5238297..5239514 (+) | 1218 | WP_341521290.1 | type II secretion system F family protein | Machinery gene |
| AABC73_RS24285 (AABC73_24295) | pilD | 5239517..5240389 (+) | 873 | WP_341521291.1 | A24 family peptidase | Machinery gene |
| AABC73_RS24290 (AABC73_24300) | coaE | 5240386..5241009 (+) | 624 | WP_341521292.1 | dephospho-CoA kinase | - |
| AABC73_RS24295 (AABC73_24305) | yacG | 5241006..5241209 (+) | 204 | WP_065836197.1 | DNA gyrase inhibitor YacG | - |
| AABC73_RS24300 (AABC73_24310) | - | 5241232..5241927 (-) | 696 | WP_341521293.1 | energy-coupling factor ABC transporter permease | - |
| AABC73_RS24305 (AABC73_24315) | - | 5241924..5242391 (-) | 468 | WP_065836195.1 | hypothetical protein | - |
| AABC73_RS24310 (AABC73_24320) | - | 5242633..5243262 (+) | 630 | WP_020291059.1 | DUF1780 domain-containing protein | - |
| AABC73_RS24315 (AABC73_24325) | - | 5243259..5243768 (+) | 510 | WP_341521294.1 | MOSC domain-containing protein | - |
| AABC73_RS24320 (AABC73_24330) | - | 5243809..5243982 (+) | 174 | WP_341521295.1 | DUF3094 family protein | - |
| AABC73_RS24325 (AABC73_24335) | - | 5244052..5245350 (+) | 1299 | WP_341521296.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31659.94 Da Isoelectric Point: 8.0433
>NTDB_id=974701 AABC73_RS24285 WP_341521291.1 5239517..5240389(+) (pilD) [Pseudomonas sp. G.S.17]
MSLLDFLATAPLAFILSTLILGLLIGSFLNVLIYRLPKMMELDWKAQSREMLGLPAEPAGETFNLILPHSRCPHCAHQIR
PWENLPVLSYLLLGGKCSSCKAPISKRYPLVELACGVLSAFIAWHFGFGWQAGAMLVLTWGLLAMSLIDADHQLLPDALV
MPLLWLGLIVNSFGLFTSLGDALWGAVAGYLTLWSVFWLFKLVTGKEGMGQGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGLIMLRMRNVATSTPIPFGPYLAIAGWIALLWGGQITASYLQFAGFK
MSLLDFLATAPLAFILSTLILGLLIGSFLNVLIYRLPKMMELDWKAQSREMLGLPAEPAGETFNLILPHSRCPHCAHQIR
PWENLPVLSYLLLGGKCSSCKAPISKRYPLVELACGVLSAFIAWHFGFGWQAGAMLVLTWGLLAMSLIDADHQLLPDALV
MPLLWLGLIVNSFGLFTSLGDALWGAVAGYLTLWSVFWLFKLVTGKEGMGQGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGLIMLRMRNVATSTPIPFGPYLAIAGWIALLWGGQITASYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=974701 AABC73_RS24285 WP_341521291.1 5239517..5240389(+) (pilD) [Pseudomonas sp. G.S.17]
ATGTCCCTCCTCGACTTCCTGGCCACCGCCCCCCTCGCCTTCATCCTATCCACACTCATACTGGGCCTTTTAATCGGCAG
CTTCCTCAACGTCCTGATCTACCGCCTGCCGAAAATGATGGAGCTGGACTGGAAAGCGCAGTCCCGGGAAATGCTGGGTC
TTCCCGCTGAGCCTGCGGGCGAAACGTTCAACCTGATCCTGCCGCATTCGCGCTGCCCGCATTGCGCGCATCAGATTCGC
CCTTGGGAAAACCTGCCGGTGCTGAGTTATCTGTTGCTCGGCGGCAAGTGTTCGAGCTGCAAGGCGCCGATCAGCAAGCG
TTACCCGTTGGTGGAGCTGGCGTGCGGTGTGTTGTCGGCATTTATCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGGG
CGATGCTGGTGTTGACCTGGGGCTTGCTGGCGATGAGCCTGATCGATGCCGACCATCAGTTGCTGCCGGATGCGCTGGTC
ATGCCGTTGCTGTGGCTGGGGCTGATCGTCAACTCGTTCGGGTTGTTCACCAGCCTGGGCGATGCGCTGTGGGGCGCGGT
GGCGGGTTATCTGACGCTGTGGTCGGTGTTCTGGCTGTTCAAATTGGTCACCGGCAAGGAAGGCATGGGCCAGGGCGATT
TCAAACTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATCCTTTTGTCCTCGCTGGTGGGC
GCGATTCTGGGCCTGATCATGCTGCGTATGCGCAACGTAGCGACCAGCACGCCGATCCCTTTTGGTCCTTATCTGGCCAT
CGCAGGCTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGCCTCTTATTTGCAGTTTGCCGGTTTCAAATGA
ATGTCCCTCCTCGACTTCCTGGCCACCGCCCCCCTCGCCTTCATCCTATCCACACTCATACTGGGCCTTTTAATCGGCAG
CTTCCTCAACGTCCTGATCTACCGCCTGCCGAAAATGATGGAGCTGGACTGGAAAGCGCAGTCCCGGGAAATGCTGGGTC
TTCCCGCTGAGCCTGCGGGCGAAACGTTCAACCTGATCCTGCCGCATTCGCGCTGCCCGCATTGCGCGCATCAGATTCGC
CCTTGGGAAAACCTGCCGGTGCTGAGTTATCTGTTGCTCGGCGGCAAGTGTTCGAGCTGCAAGGCGCCGATCAGCAAGCG
TTACCCGTTGGTGGAGCTGGCGTGCGGTGTGTTGTCGGCATTTATCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGGG
CGATGCTGGTGTTGACCTGGGGCTTGCTGGCGATGAGCCTGATCGATGCCGACCATCAGTTGCTGCCGGATGCGCTGGTC
ATGCCGTTGCTGTGGCTGGGGCTGATCGTCAACTCGTTCGGGTTGTTCACCAGCCTGGGCGATGCGCTGTGGGGCGCGGT
GGCGGGTTATCTGACGCTGTGGTCGGTGTTCTGGCTGTTCAAATTGGTCACCGGCAAGGAAGGCATGGGCCAGGGCGATT
TCAAACTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATCCTTTTGTCCTCGCTGGTGGGC
GCGATTCTGGGCCTGATCATGCTGCGTATGCGCAACGTAGCGACCAGCACGCCGATCCCTTTTGGTCCTTATCTGGCCAT
CGCAGGCTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGCCTCTTATTTGCAGTTTGCCGGTTTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.109 |
94.483 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter baumannii D1279779 |
52.19 |
94.483 |
0.493 |
| pilD | Acinetobacter nosocomialis M2 |
51.46 |
94.483 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
49.627 |
92.414 |
0.459 |