Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACMX77_RS08200 Genome accession   NZ_CP180438
Coordinates   1560940..1561389 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain W-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555940..1566389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS08160 (ACMX77_08160) ctaE 1555956..1556579 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ACMX77_RS08165 (ACMX77_08165) ctaF 1556582..1556914 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ACMX77_RS08170 (ACMX77_08170) ctaG 1556942..1557835 (+) 894 WP_033883825.1 cytochrome c oxidase assembly factor CtaG -
  ACMX77_RS08175 (ACMX77_08175) ylbA 1557867..1558229 (-) 363 WP_003232238.1 YugN family protein -
  ACMX77_RS08180 (ACMX77_08180) ylbB 1558369..1558815 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ACMX77_RS08185 (ACMX77_08185) ylbC 1558899..1559939 (+) 1041 WP_047182571.1 CAP domain-containing protein -
  ACMX77_RS08190 (ACMX77_08190) ylbD 1560171..1560569 (+) 399 WP_003232233.1 YlbD family protein -
  ACMX77_RS08195 (ACMX77_08195) ylbE 1560585..1560824 (+) 240 WP_003232231.1 YlbE-like family protein -
  ACMX77_RS08200 (ACMX77_08200) ylbF 1560940..1561389 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACMX77_RS08205 (ACMX77_08205) ylbG 1561444..1561716 (+) 273 WP_009967171.1 YlbG family protein -
  ACMX77_RS08210 (ACMX77_08210) rsmD 1562039..1562593 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACMX77_RS08215 (ACMX77_08215) coaD 1562598..1563083 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACMX77_RS08220 (ACMX77_08220) spoVV 1563094..1564320 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ACMX77_RS08225 (ACMX77_08225) ylbK 1564501..1565283 (+) 783 WP_047182573.1 patatin family protein -
  ACMX77_RS08230 (ACMX77_08230) sepM 1565285..1566310 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=974699 ACMX77_RS08200 WP_003221370.1 1560940..1561389(+) (ylbF) [Bacillus subtilis strain W-2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=974699 ACMX77_RS08200 WP_003221370.1 1560940..1561389(+) (ylbF) [Bacillus subtilis strain W-2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGTGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment