Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | AAAF57_RS00805 | Genome accession | NZ_CP150847 |
| Coordinates | 155602..155916 (+) | Length | 104 a.a. |
| NCBI ID | WP_037611125.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain KSS5 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 150602..160916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAAF57_RS00790 (AAAF57_00790) | - | 153228..153590 (+) | 363 | WP_014635121.1 | DUF1033 family protein | - |
| AAAF57_RS00795 (AAAF57_00795) | comGA/cglA/cilD | 153670..154611 (+) | 942 | WP_002887018.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AAAF57_RS00800 (AAAF57_00800) | comYB | 154493..155593 (+) | 1101 | WP_148263031.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AAAF57_RS00805 (AAAF57_00805) | comYC | 155602..155916 (+) | 315 | WP_037611125.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AAAF57_RS00810 (AAAF57_00810) | comYD | 155876..156304 (+) | 429 | WP_270334813.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AAAF57_RS00815 (AAAF57_00815) | comGE | 156336..156566 (+) | 231 | WP_021144685.1 | competence type IV pilus minor pilin ComGE | - |
| AAAF57_RS00820 (AAAF57_00820) | comYF | 156553..156990 (+) | 438 | WP_227071977.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AAAF57_RS00825 (AAAF57_00825) | comGG | 156968..157285 (+) | 318 | WP_227071976.1 | competence type IV pilus minor pilin ComGG | - |
| AAAF57_RS00830 (AAAF57_00830) | comYH | 157330..158286 (+) | 957 | WP_227071975.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AAAF57_RS00835 (AAAF57_00835) | - | 158343..159536 (+) | 1194 | WP_002885831.1 | acetate kinase | - |
| AAAF57_RS00840 (AAAF57_00840) | - | 159789..159986 (+) | 198 | WP_002885716.1 | helix-turn-helix transcriptional regulator | - |
| AAAF57_RS00845 (AAAF57_00845) | - | 159998..160594 (+) | 597 | WP_410536720.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11428.31 Da Isoelectric Point: 9.7150
>NTDB_id=972937 AAAF57_RS00805 WP_037611125.1 155602..155916(+) (comYC) [Streptococcus salivarius strain KSS5]
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=972937 AAAF57_RS00805 WP_037611125.1 155602..155916(+) (comYC) [Streptococcus salivarius strain KSS5]
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus mutans UA140 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus mutans UA159 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
64.762 |
100 |
0.654 |
| comGC/cglC | Streptococcus mitis SK321 |
63.636 |
95.192 |
0.606 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
59.406 |
97.115 |
0.577 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.416 |
97.115 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.596 |
95.192 |
0.567 |
| comYC | Streptococcus suis isolate S10 |
61.364 |
84.615 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
75 |
0.375 |
| comGC | Staphylococcus aureus N315 |
50 |
75 |
0.375 |