Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WN777_RS10605 Genome accession   NZ_CP150839
Coordinates   2054551..2054886 (+) Length   111 a.a.
NCBI ID   WP_242293909.1    Uniprot ID   -
Organism   Bacillus pacificus strain SG15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2049551..2059886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS10580 (WN777_10565) - 2049834..2050574 (-) 741 WP_318160760.1 hypothetical protein -
  WN777_RS10585 (WN777_10570) - 2050684..2051331 (+) 648 WP_000165941.1 HD domain-containing protein -
  WN777_RS10590 (WN777_10575) - 2051328..2053223 (+) 1896 WP_014893791.1 ABC-F family ATP-binding cassette domain-containing protein -
  WN777_RS10595 (WN777_10580) - 2053299..2054030 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family protein -
  WN777_RS10600 (WN777_10585) - 2054137..2054391 (+) 255 WP_000975124.1 DUF4318 domain-containing protein -
  WN777_RS10605 (WN777_10590) ssbA 2054551..2054886 (+) 336 WP_242293909.1 single-stranded DNA-binding protein Machinery gene
  WN777_RS10610 (WN777_10595) - 2054915..2055505 (-) 591 WP_062821420.1 TetR/AcrR family transcriptional regulator -
  WN777_RS10615 (WN777_10600) - 2055628..2056761 (-) 1134 WP_242293908.1 FAD-dependent monooxygenase -
  WN777_RS10620 (WN777_10605) - 2057020..2058147 (+) 1128 WP_242293907.1 conserved virulence factor C family protein -
  WN777_RS10625 (WN777_10610) - 2058151..2058534 (+) 384 WP_318160759.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  WN777_RS10630 (WN777_10615) - 2058618..2059052 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  WN777_RS10635 (WN777_10620) - 2059102..2059878 (+) 777 WP_139867399.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12806.66 Da        Isoelectric Point: 9.4610

>NTDB_id=972830 WN777_RS10605 WP_242293909.1 2054551..2054886(+) (ssbA) [Bacillus pacificus strain SG15]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVIWRRSAENVTEYCTKGSLVGITGRIHTR
NYEDNQGKRIYITEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=972830 WN777_RS10605 WP_242293909.1 2054551..2054886(+) (ssbA) [Bacillus pacificus strain SG15]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGCTTAGGTGAGCAGCAAGTAGATTTTATTAATTGCGTCATAT
GGAGAAGGTCAGCTGAGAATGTAACTGAATATTGTACGAAAGGTTCACTTGTTGGAATTACTGGACGTATTCATACGAGG
AATTACGAGGATAATCAAGGAAAGAGAATATATATAACGGAAGTTGTGATTGAGAGCATTACATTTTTGGAGAGAAGGAG
GGAGGGCGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

94.595

0.441
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.545

99.099

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae Rx1

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae D39

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae R6

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis SK321

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

42.727

99.099

0.423

Multiple sequence alignment