Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AABD45_RS12920 Genome accession   NZ_CP150831
Coordinates   2789124..2790227 (-) Length   367 a.a.
NCBI ID   WP_406849040.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2784124..2795227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS12890 (AABD45_13430) hemF 2784677..2785594 (-) 918 WP_039451470.1 oxygen-dependent coproporphyrinogen oxidase -
  AABD45_RS12895 (AABD45_13435) - 2785623..2786180 (-) 558 WP_026050282.1 L-threonylcarbamoyladenylate synthase -
  AABD45_RS12900 (AABD45_13440) purE 2786361..2786846 (+) 486 WP_038939100.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AABD45_RS12905 (AABD45_13445) - 2786850..2787983 (+) 1134 WP_406849039.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AABD45_RS12910 (AABD45_13450) - 2788049..2788618 (-) 570 WP_039549563.1 type I DNA topoisomerase -
  AABD45_RS12915 (AABD45_13455) - 2788642..2789121 (-) 480 WP_026050366.1 DUF494 family protein -
  AABD45_RS12920 (AABD45_13460) dprA 2789124..2790227 (-) 1104 WP_406849040.1 DNA-processing protein DprA Machinery gene
  AABD45_RS12925 (AABD45_13465) - 2790227..2791324 (-) 1098 WP_017419870.1 LysM peptidoglycan-binding domain-containing protein -
  AABD45_RS12930 (AABD45_13470) def 2791463..2791975 (+) 513 WP_406849041.1 peptide deformylase -
  AABD45_RS12935 (AABD45_13475) fmt 2792007..2792954 (+) 948 WP_038964321.1 methionyl-tRNA formyltransferase -
  AABD45_RS12940 (AABD45_13480) rsmB 2793038..2794318 (+) 1281 WP_039451454.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39491.00 Da        Isoelectric Point: 6.9365

>NTDB_id=972734 AABD45_RS12920 WP_406849040.1 2789124..2790227(-) (dprA) [Vibrio vulnificus strain Per1]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSHEQLLSLGLSSQQIITLRSNAQQDAEAALQWQQLSSQHHII
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQVALVGSRHATMEGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQHIYPARHKGLAARICQQGALVSEFRPSTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPSSLHITNARGGNALIKSGACLVTGVEDVLSEVQTLLNWSTNQQADLFSSSNTEEQLPFPQLLANV
GNEATPVDILVNRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=972734 AABD45_RS12920 WP_406849040.1 2789124..2790227(-) (dprA) [Vibrio vulnificus strain Per1]
ATGAGTCAGGATGAACTGCATGCTTGGTTAGCACTTAGTTTTACGCCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTATTCCCACGAGCAGCTACTGTCGCTGGGACTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAATGCTCAGCAAGACGCTGAAGCCGCTCTTCAATGGCAGCAGCTTTCCTCCCAGCATCATATTATT
ACCCTTCATGATGGCCTATATCCGCCGCTACTTAAGGAAACGGCTTCACCGCCTTGCCAACTGTTTGTACAAGGTGATCC
TCATTGTTTAACCAAGCCACAAGTAGCACTGGTGGGGAGTCGTCATGCGACCATGGAAGGGTTGCAGCATGCCCGCGATT
TTGCGGCTCAATTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTGGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGACAGCGGGAGGTGAAACCGTTGCAGTACTTGGTTCGGGCTTTCAACACATTTATCCCGCTCGCCATAAAGGTCT
TGCCGCGAGAATTTGTCAACAAGGTGCGCTGGTTTCGGAGTTCCGTCCGAGTACCAAAGCCAAAGCAGAACATTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTGGTGGTCGAAGCAGCAGAGAAAAGTGGCTCTTTGATTACT
GCCCGTTATGCTGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCTAGTTCTCTTCATATTACCAATGCACGTGGTGGAAA
CGCGCTGATAAAAAGCGGAGCTTGTTTGGTCACTGGTGTTGAGGATGTACTGAGTGAAGTGCAAACCTTGCTTAACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACTGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTTTAGTAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTAGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(315-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.595

98.91

0.678
  dprA Vibrio cholerae strain A1552

58.491

100

0.591
  dprA Glaesserella parasuis strain SC1401

44.293

100

0.444
  dprA Legionella pneumophila strain ERS1305867

44.044

98.365

0.433
  dprA Haemophilus influenzae Rd KW20

40.909

100

0.417
  dprA Neisseria meningitidis MC58

37.94

100

0.411
  dprA Neisseria meningitidis strain C311

37.94

100

0.411
  dprA Neisseria gonorrhoeae strain FA1090

37.374

100

0.403
  dprA Neisseria gonorrhoeae MS11

37.121

100

0.401
  dprA Acinetobacter baylyi ADP1

37.701

100

0.384
  dprA Acinetobacter baumannii strain A118

42.169

90.463

0.381
  dprA Acinetobacter baumannii D1279779

41.39

90.191

0.373

Multiple sequence alignment