Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AABD45_RS00695 | Genome accession | NZ_CP150831 |
| Coordinates | 121323..121787 (-) | Length | 154 a.a. |
| NCBI ID | WP_072603236.1 | Uniprot ID | A0A2S3QYZ1 |
| Organism | Vibrio vulnificus strain Per1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 116323..126787
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABD45_RS00675 (AABD45_00675) | coaE | 116781..117389 (-) | 609 | WP_225490802.1 | dephospho-CoA kinase | - |
| AABD45_RS00680 (AABD45_00680) | pilD | 117391..118260 (-) | 870 | WP_130199940.1 | A24 family peptidase | Machinery gene |
| AABD45_RS00685 (AABD45_00685) | pilC | 118354..119580 (-) | 1227 | WP_406849130.1 | type II secretion system F family protein | Machinery gene |
| AABD45_RS00690 (AABD45_00690) | pilB | 119628..121316 (-) | 1689 | WP_225490803.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AABD45_RS00695 (AABD45_00695) | pilA | 121323..121787 (-) | 465 | WP_072603236.1 | pilin | Machinery gene |
| AABD45_RS00700 (AABD45_00700) | nadC | 122010..122897 (-) | 888 | WP_017421195.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AABD45_RS00705 (AABD45_00705) | ampD | 122990..123562 (+) | 573 | WP_225490804.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AABD45_RS00710 (AABD45_00710) | pdhR | 123951..124718 (+) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 15764.31 Da Isoelectric Point: 9.0831
>NTDB_id=972715 AABD45_RS00695 WP_072603236.1 121323..121787(-) (pilA) [Vibrio vulnificus strain Per1]
MKKLNKTKKQQGFTLIELMIVIAVIGVLSAIAFPQYQKYVAKSEIASVLATLTGAKTNVEATTVETGAFPAAGKETALGV
PAMPLGTVAFAPNADNPDAGTITFTFDAAGADASALVAGKKLILTRTTATGAWACTSDIKKADSLLPKTCTGAD
MKKLNKTKKQQGFTLIELMIVIAVIGVLSAIAFPQYQKYVAKSEIASVLATLTGAKTNVEATTVETGAFPAAGKETALGV
PAMPLGTVAFAPNADNPDAGTITFTFDAAGADASALVAGKKLILTRTTATGAWACTSDIKKADSLLPKTCTGAD
Nucleotide
Download Length: 465 bp
>NTDB_id=972715 AABD45_RS00695 WP_072603236.1 121323..121787(-) (pilA) [Vibrio vulnificus strain Per1]
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAATCGCTGTTATCGGTGT
TCTTTCTGCAATAGCGTTCCCTCAATATCAAAAGTATGTGGCCAAAAGTGAAATTGCGTCGGTACTTGCGACATTAACCG
GAGCAAAAACCAACGTTGAAGCTACAACAGTAGAGACAGGAGCTTTTCCAGCCGCAGGAAAAGAAACTGCGCTAGGGGTA
CCAGCAATGCCATTGGGAACGGTAGCATTTGCTCCAAACGCAGATAATCCGGATGCTGGTACTATAACATTTACTTTCGA
TGCTGCTGGTGCCGATGCGAGCGCACTAGTCGCAGGTAAAAAACTGATCTTAACTCGTACAACAGCAACAGGAGCTTGGG
CTTGTACATCGGACATCAAAAAGGCCGATAGCCTATTGCCCAAAACATGCACTGGTGCTGATTAG
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAATCGCTGTTATCGGTGT
TCTTTCTGCAATAGCGTTCCCTCAATATCAAAAGTATGTGGCCAAAAGTGAAATTGCGTCGGTACTTGCGACATTAACCG
GAGCAAAAACCAACGTTGAAGCTACAACAGTAGAGACAGGAGCTTTTCCAGCCGCAGGAAAAGAAACTGCGCTAGGGGTA
CCAGCAATGCCATTGGGAACGGTAGCATTTGCTCCAAACGCAGATAATCCGGATGCTGGTACTATAACATTTACTTTCGA
TGCTGCTGGTGCCGATGCGAGCGCACTAGTCGCAGGTAAAAAACTGATCTTAACTCGTACAACAGCAACAGGAGCTTGGG
CTTGTACATCGGACATCAAAAAGGCCGATAGCCTATTGCCCAAAACATGCACTGGTGCTGATTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Pseudomonas aeruginosa PAK |
48.052 |
100 |
0.481 |
| pilA | Vibrio cholerae strain A1552 |
45.806 |
100 |
0.461 |
| pilA | Vibrio cholerae C6706 |
45.806 |
100 |
0.461 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.806 |
100 |
0.461 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.761 |
87.013 |
0.416 |
| pilA | Acinetobacter baumannii strain A118 |
42.069 |
94.156 |
0.396 |
| pilA | Vibrio campbellii strain DS40M4 |
40.69 |
94.156 |
0.383 |