Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AABD45_RS00685 Genome accession   NZ_CP150831
Coordinates   118354..119580 (-) Length   408 a.a.
NCBI ID   WP_406849130.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113354..124580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS00645 (AABD45_00645) rpsP 113543..113791 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  AABD45_RS00650 (AABD45_00650) rimM 113807..114355 (+) 549 WP_038941427.1 ribosome maturation factor RimM -
  AABD45_RS00655 (AABD45_00655) trmD 114383..115132 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AABD45_RS00660 (AABD45_00660) rplS 115174..115527 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  AABD45_RS00665 (AABD45_00665) yacG 115751..115945 (-) 195 WP_038941426.1 DNA gyrase inhibitor YacG -
  AABD45_RS00670 (AABD45_00670) zapD 116008..116748 (-) 741 WP_017421189.1 cell division protein ZapD -
  AABD45_RS00675 (AABD45_00675) coaE 116781..117389 (-) 609 WP_225490802.1 dephospho-CoA kinase -
  AABD45_RS00680 (AABD45_00680) pilD 117391..118260 (-) 870 WP_130199940.1 A24 family peptidase Machinery gene
  AABD45_RS00685 (AABD45_00685) pilC 118354..119580 (-) 1227 WP_406849130.1 type II secretion system F family protein Machinery gene
  AABD45_RS00690 (AABD45_00690) pilB 119628..121316 (-) 1689 WP_225490803.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AABD45_RS00695 (AABD45_00695) pilA 121323..121787 (-) 465 WP_072603236.1 pilin Machinery gene
  AABD45_RS00700 (AABD45_00700) nadC 122010..122897 (-) 888 WP_017421195.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AABD45_RS00705 (AABD45_00705) ampD 122990..123562 (+) 573 WP_225490804.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45214.56 Da        Isoelectric Point: 10.3569

>NTDB_id=972713 AABD45_RS00685 WP_406849130.1 118354..119580(-) (pilC) [Vibrio vulnificus strain Per1]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKLPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=972713 AABD45_RS00685 WP_406849130.1 118354..119580(-) (pilC) [Vibrio vulnificus strain Per1]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCCGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTTACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTTCCTATTCTACAATCGCTCAAATTGGTTGCCGACAACCATCGCAAAGCTGAGATGAAATCAATCTT
AGCCAGTGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTCGACTTAGTCGCCACTGGTGAACAATCGGGGAATCTTGATCAAGTTTTTGAACGGCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTAATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAATTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCCATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGCTCCCTGTGATTGGTGG
GGTCTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGCTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACTGCAGCC
GGAATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTTGTCGTCGGCGGATTAGTCGCCGCCATGTACCTGCCGATC
TTTAACTTAATGAGTGTTATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.564

98.284

0.733
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40.244

100

0.404
  pilC Acinetobacter baylyi ADP1

41.103

97.794

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Legionella pneumophila strain ERS1305867

40.547

98.529

0.4

Multiple sequence alignment