Detailed information NTG0972712

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABD45_RS00680
• Genome accession: NZ_CP150831
• Coordinates: 117391..118260 (-)
• Length: 289 a.a.
• NCBI ID: WP_130199940.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain Per1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 112391..123260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD45_RS00645 (AABD45_00645)	rpsP	113543..113791 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
AABD45_RS00650 (AABD45_00650)	rimM	113807..114355 (+)	549	WP_038941427.1	ribosome maturation factor RimM	-
AABD45_RS00655 (AABD45_00655)	trmD	114383..115132 (+)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AABD45_RS00660 (AABD45_00660)	rplS	115174..115527 (+)	354	WP_011079544.1	50S ribosomal protein L19	-
AABD45_RS00665 (AABD45_00665)	yacG	115751..115945 (-)	195	WP_038941426.1	DNA gyrase inhibitor YacG	-
AABD45_RS00670 (AABD45_00670)	zapD	116008..116748 (-)	741	WP_017421189.1	cell division protein ZapD	-
AABD45_RS00675 (AABD45_00675)	coaE	116781..117389 (-)	609	WP_225490802.1	dephospho-CoA kinase	-
AABD45_RS00680 (AABD45_00680)	pilD	117391..118260 (-)	870	WP_130199940.1	A24 family peptidase	Machinery gene
AABD45_RS00685 (AABD45_00685)	pilC	118354..119580 (-)	1227	WP_406849130.1	type II secretion system F family protein	Machinery gene
AABD45_RS00690 (AABD45_00690)	pilB	119628..121316 (-)	1689	WP_225490803.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AABD45_RS00695 (AABD45_00695)	pilA	121323..121787 (-)	465	WP_072603236.1	pilin	Machinery gene
AABD45_RS00700 (AABD45_00700)	nadC	122010..122897 (-)	888	WP_017421195.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32245.33 Da
• Isoelectric Point: 6.8198

>NTDB_id=972712 AABD45_RS00680 WP_130199940.1 117391..118260(-) (pilD) [Vibrio vulnificus strain Per1]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITIALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=972712 AABD45_RS00680 WP_130199940.1 117391..118260(-) (pilD) [Vibrio vulnificus strain Per1]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATATAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCATAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCTACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGTTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTTGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAATTATCTTATAGGGGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.163	100	0.772
pilD	Vibrio cholerae strain A1552	71.181	99.654	0.709
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	48	95.156	0.457