Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | V8V52_RS18735 | Genome accession | NZ_CP150648 |
| Coordinates | 3662051..3662389 (-) | Length | 112 a.a. |
| NCBI ID | WP_088032755.1 | Uniprot ID | A0A243AAR6 |
| Organism | Bacillus mycoides strain 4BM1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3662051..3677355 | 3662051..3662389 | within | 0 |
Gene organization within MGE regions
Location: 3662051..3677355
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V8V52_RS18735 (V8V52_18735) | ssbA | 3662051..3662389 (-) | 339 | WP_088032755.1 | single-stranded DNA-binding protein | Machinery gene |
| V8V52_RS18740 (V8V52_18740) | - | 3662551..3662805 (-) | 255 | WP_088032753.1 | DUF4318 domain-containing protein | - |
| V8V52_RS18745 (V8V52_18745) | - | 3662900..3663631 (-) | 732 | WP_088032751.1 | Bax inhibitor-1/YccA family protein | - |
| V8V52_RS18750 (V8V52_18750) | - | 3663707..3665602 (-) | 1896 | WP_088032749.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| V8V52_RS18755 (V8V52_18755) | - | 3665599..3666246 (-) | 648 | WP_088032748.1 | HD domain-containing protein | - |
| V8V52_RS18760 (V8V52_18760) | - | 3666356..3667033 (+) | 678 | WP_088032747.1 | hypothetical protein | - |
| V8V52_RS18765 (V8V52_18765) | - | 3667615..3667866 (-) | 252 | Protein_3645 | hydrolase | - |
| V8V52_RS18770 (V8V52_18770) | - | 3667929..3668096 (-) | 168 | WP_084667385.1 | hypothetical protein | - |
| V8V52_RS18775 (V8V52_18775) | - | 3668661..3669176 (-) | 516 | WP_088032745.1 | DUF3231 family protein | - |
| V8V52_RS18780 (V8V52_18780) | - | 3669523..3669852 (+) | 330 | WP_002165182.1 | WGxxGxxG family protein | - |
| V8V52_RS18785 (V8V52_18785) | - | 3670219..3670452 (-) | 234 | WP_002165181.1 | hemolysin XhlA family protein | - |
| V8V52_RS18790 (V8V52_18790) | - | 3670953..3671495 (-) | 543 | WP_088032743.1 | site-specific integrase | - |
| V8V52_RS18795 (V8V52_18795) | - | 3671492..3671962 (-) | 471 | Protein_3651 | ArpU family phage packaging/lysis transcriptional regulator | - |
| V8V52_RS18800 (V8V52_18800) | - | 3673736..3674269 (+) | 534 | WP_328035304.1 | hypothetical protein | - |
| V8V52_RS18805 (V8V52_18805) | - | 3674707..3675117 (-) | 411 | WP_088032739.1 | hypothetical protein | - |
| V8V52_RS18810 (V8V52_18810) | - | 3675149..3675444 (-) | 296 | Protein_3654 | hypothetical protein | - |
| V8V52_RS18815 (V8V52_18815) | - | 3675778..3675969 (-) | 192 | WP_044442009.1 | DUF3954 domain-containing protein | - |
| V8V52_RS18820 (V8V52_18820) | - | 3676033..3676395 (-) | 363 | WP_088032735.1 | cell division protein SepF | - |
| V8V52_RS18825 (V8V52_18825) | - | 3676380..3676535 (-) | 156 | WP_176280928.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12968.76 Da Isoelectric Point: 9.0926
>NTDB_id=970931 V8V52_RS18735 WP_088032755.1 3662051..3662389(-) (ssbA) [Bacillus mycoides strain 4BM1]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIENITFLERRRESTSQ
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIENITFLERRRESTSQ
Nucleotide
Download Length: 339 bp
>NTDB_id=970931 V8V52_RS18735 WP_088032755.1 3662051..3662389(-) (ssbA) [Bacillus mycoides strain 4BM1]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATAAATTGTGTCGTAT
GGCGAAAATCAGCTGAAAATGTAACAGAATATTGTACGAAGGGTTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAATATTACATTTTTAGAGAGAAGGCG
GGAGAGTACATCGCAATAA
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATAAATTGTGTCGTAT
GGCGAAAATCAGCTGAAAATGTAACAGAATATTGTACGAAGGGTTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAATATTACATTTTTAGAGAGAAGGCG
GGAGAGTACATCGCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
94.643 |
0.536 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.717 |
94.643 |
0.518 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
51.887 |
94.643 |
0.491 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.34 |
94.643 |
0.42 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
44.762 |
93.75 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.453 |
94.643 |
0.402 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.453 |
94.643 |
0.402 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.509 |
94.643 |
0.393 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.509 |
94.643 |
0.393 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.509 |
94.643 |
0.393 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.509 |
94.643 |
0.393 |
| ssbA | Streptococcus mutans UA159 |
40.566 |
94.643 |
0.384 |