Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OO966_RS01905 | Genome accession | NZ_AP026780 |
| Coordinates | 392909..393343 (-) | Length | 144 a.a. |
| NCBI ID | WP_264954813.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain 04Ya311 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 387909..398343
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO966_RS01885 (PDY_03540) | coaE | 388257..388856 (-) | 600 | WP_264954811.1 | dephospho-CoA kinase | - |
| OO966_RS01890 (PDY_03550) | pilD | 388858..389736 (-) | 879 | WP_106338474.1 | prepilin peptidase | Machinery gene |
| OO966_RS01895 (PDY_03560) | pilC | 389919..391145 (-) | 1227 | WP_106338472.1 | type II secretion system F family protein | Machinery gene |
| OO966_RS01900 (PDY_03570) | pilB | 391211..392902 (-) | 1692 | WP_264954812.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OO966_RS01905 (PDY_03580) | pilA | 392909..393343 (-) | 435 | WP_264954813.1 | pilin | Machinery gene |
| OO966_RS01910 (PDY_03590) | ampD | 393732..394310 (+) | 579 | WP_138222126.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OO966_RS01915 (PDY_03600) | pdhR | 394670..395443 (+) | 774 | WP_005297609.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| OO966_RS01920 (PDY_03610) | aceE | 395524..398184 (+) | 2661 | WP_068945542.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14861.91 Da Isoelectric Point: 6.2367
>NTDB_id=96943 OO966_RS01905 WP_264954813.1 392909..393343(-) (pilA) [Photobacterium damselae subsp. damselae strain 04Ya311]
MKGQKGFTLIELMIVVAVIGVLAAIAIPQYEKYVAKSQGASALATISALKTNIESAIAEDSTFPSVTATSGGNSTYGMPK
TDMGTVALAPTQGASNAGGTITYKFTSASSLLNTKDLVLTRDDSGNWDCSTTVSDTTLVPKTCR
MKGQKGFTLIELMIVVAVIGVLAAIAIPQYEKYVAKSQGASALATISALKTNIESAIAEDSTFPSVTATSGGNSTYGMPK
TDMGTVALAPTQGASNAGGTITYKFTSASSLLNTKDLVLTRDDSGNWDCSTTVSDTTLVPKTCR
Nucleotide
Download Length: 435 bp
>NTDB_id=96943 OO966_RS01905 WP_264954813.1 392909..393343(-) (pilA) [Photobacterium damselae subsp. damselae strain 04Ya311]
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATTGTTGTAGCAGTTATTGGTGTACTAGCGGCTATTGCAAT
TCCTCAATATGAAAAATATGTTGCTAAATCACAAGGAGCATCAGCTTTAGCTACAATATCAGCCTTAAAAACAAATATTG
AAAGTGCCATTGCTGAAGACAGTACTTTCCCCTCTGTTACAGCTACAAGTGGAGGAAACTCAACATATGGAATGCCAAAA
ACAGATATGGGAACAGTCGCATTAGCTCCTACTCAAGGAGCTAGTAATGCAGGAGGAACAATAACGTATAAATTTACTTC
TGCTAGCTCTCTATTAAATACCAAAGATTTAGTACTAACTCGAGATGATTCAGGTAACTGGGATTGCTCAACTACTGTAT
CTGATACAACGCTAGTTCCAAAAACTTGTCGTTAA
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATTGTTGTAGCAGTTATTGGTGTACTAGCGGCTATTGCAAT
TCCTCAATATGAAAAATATGTTGCTAAATCACAAGGAGCATCAGCTTTAGCTACAATATCAGCCTTAAAAACAAATATTG
AAAGTGCCATTGCTGAAGACAGTACTTTCCCCTCTGTTACAGCTACAAGTGGAGGAAACTCAACATATGGAATGCCAAAA
ACAGATATGGGAACAGTCGCATTAGCTCCTACTCAAGGAGCTAGTAATGCAGGAGGAACAATAACGTATAAATTTACTTC
TGCTAGCTCTCTATTAAATACCAAAGATTTAGTACTAACTCGAGATGATTCAGGTAACTGGGATTGCTCAACTACTGTAT
CTGATACAACGCTAGTTCCAAAAACTTGTCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
54.11 |
100 |
0.549 |
| pilA | Vibrio cholerae strain A1552 |
54.11 |
100 |
0.549 |
| pilA | Vibrio cholerae C6706 |
54.11 |
100 |
0.549 |
| pilA | Pseudomonas aeruginosa PAK |
44.295 |
100 |
0.458 |
| pilA | Acinetobacter baumannii strain A118 |
42.953 |
100 |
0.444 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.816 |
100 |
0.417 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.714 |
97.222 |
0.396 |
| comP | Acinetobacter baylyi ADP1 |
36.735 |
100 |
0.375 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.86 |
89.583 |
0.375 |