Detailed information NTG0096940

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OO966_RS01890
• Genome accession: NZ_AP026780
• Coordinates: 388858..389736 (-)
• Length: 292 a.a.
• NCBI ID: WP_106338474.1
• Uniprot ID: -
• Organism: Photobacterium damselae subsp. damselae strain 04Ya311
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 383858..394736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO966_RS01865 (PDY_03500)	secA	383883..386603 (+)	2721	WP_069530750.1	preprotein translocase subunit SecA	-
OO966_RS01870 (PDY_03510)	mutT	386728..387150 (-)	423	WP_138241280.1	8-oxo-dGTP diphosphatase MutT	-
OO966_RS01875 (PDY_03520)	yacG	387231..387440 (-)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
OO966_RS01880 (PDY_03530)	zapD	387449..388186 (-)	738	WP_264954810.1	cell division protein ZapD	-
OO966_RS01885 (PDY_03540)	coaE	388257..388856 (-)	600	WP_264954811.1	dephospho-CoA kinase	-
OO966_RS01890 (PDY_03550)	pilD	388858..389736 (-)	879	WP_106338474.1	prepilin peptidase	Machinery gene
OO966_RS01895 (PDY_03560)	pilC	389919..391145 (-)	1227	WP_106338472.1	type II secretion system F family protein	Machinery gene
OO966_RS01900 (PDY_03570)	pilB	391211..392902 (-)	1692	WP_264954812.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OO966_RS01905 (PDY_03580)	pilA	392909..393343 (-)	435	WP_264954813.1	pilin	Machinery gene
OO966_RS01910 (PDY_03590)	ampD	393732..394310 (+)	579	WP_138222126.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32529.06 Da
• Isoelectric Point: 8.2918

>NTDB_id=96940 OO966_RS01890 WP_106338474.1 388858..389736(-) (pilD) [Photobacterium damselae subsp. damselae strain 04Ya311]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHAPISRRYPMIELLTAALCGTVAILFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=96940 OO966_RS01890 WP_106338474.1 388858..389736(-) (pilD) [Photobacterium damselae subsp. damselae strain 04Ya311]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTATTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATTGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGCTAAATACCGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATTCCTGTTATTAGTTGGCTGGTATTAAAGGGGAAGTGTAAATCTTGTCACGCACCGATTAGCCG
ACGTTACCCTATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCACCAACTTGGTGGGCGG
TTGCAGTAATCTTTTTCACTTTTGCCTTAATTGCTCTAACTTTTATCGATATTGATAAGATGCTACTGCCCGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCGCTACAAGATTCTGTGATTGG
TGCAATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGATCTTTAAATTATTAACCAAAAAAGACGGTATGGGTTATG
GCGACTTTAAGCTGTTAGCTGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTGCCTGTTGTGGTTCTGCTATCCTCTCTT
GCCGGGGCGATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCAGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.753	100	0.658
pilD	Vibrio cholerae strain A1552	62.457	100	0.627
pilD	Acinetobacter nosocomialis M2	52.045	92.123	0.479
pilD	Acinetobacter baumannii D1279779	52.045	92.123	0.479
pilD	Neisseria gonorrhoeae MS11	47.842	95.205	0.455