Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OO966_RS01895 Genome accession   NZ_AP026780
Coordinates   389919..391145 (-) Length   408 a.a.
NCBI ID   WP_106338472.1    Uniprot ID   A0AAD3ZVT0
Organism   Photobacterium damselae subsp. damselae strain 04Ya311     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384919..396145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO966_RS01870 (PDY_03510) mutT 386728..387150 (-) 423 WP_138241280.1 8-oxo-dGTP diphosphatase MutT -
  OO966_RS01875 (PDY_03520) yacG 387231..387440 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  OO966_RS01880 (PDY_03530) zapD 387449..388186 (-) 738 WP_264954810.1 cell division protein ZapD -
  OO966_RS01885 (PDY_03540) coaE 388257..388856 (-) 600 WP_264954811.1 dephospho-CoA kinase -
  OO966_RS01890 (PDY_03550) pilD 388858..389736 (-) 879 WP_106338474.1 prepilin peptidase Machinery gene
  OO966_RS01895 (PDY_03560) pilC 389919..391145 (-) 1227 WP_106338472.1 type II secretion system F family protein Machinery gene
  OO966_RS01900 (PDY_03570) pilB 391211..392902 (-) 1692 WP_264954812.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OO966_RS01905 (PDY_03580) pilA 392909..393343 (-) 435 WP_264954813.1 pilin Machinery gene
  OO966_RS01910 (PDY_03590) ampD 393732..394310 (+) 579 WP_138222126.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OO966_RS01915 (PDY_03600) pdhR 394670..395443 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45016.15 Da        Isoelectric Point: 10.0330

>NTDB_id=96941 OO966_RS01895 WP_106338472.1 389919..391145(-) (pilC) [Photobacterium damselae subsp. damselae strain 04Ya311]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=96941 OO966_RS01895 WP_106338472.1 389919..391145(-) (pilC) [Photobacterium damselae subsp. damselae strain 04Ya311]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGCTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCAATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACTACTTTTAGTGCCGGTATTCCACTGTTAACAG
GGCTACAGTCGGCTGGTAAAACCGCAGGCAACTTACATATTGAAGAAGCTATTATGGAGGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
ATCCGGATCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373

Multiple sequence alignment