Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MHH79_RS18685 Genome accession   NZ_CP150275
Coordinates   3610208..3610549 (-) Length   113 a.a.
NCBI ID   WP_340034808.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3605208..3615549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS18670 (MHH79_18670) - 3605450..3608218 (+) 2769 WP_340034807.1 DEAD/DEAH box helicase -
  MHH79_RS18675 (MHH79_18675) ywpJ 3608344..3609201 (-) 858 WP_015384856.1 phosphatase YwpJ -
  MHH79_RS18680 (MHH79_18680) glcR 3609207..3609983 (-) 777 WP_251217759.1 transcriptional regulator GlcR -
  MHH79_RS18685 (MHH79_18685) ssbB 3610208..3610549 (-) 342 WP_340034808.1 single-stranded DNA-binding protein SsbB Machinery gene
  MHH79_RS18690 (MHH79_18690) ywpG 3610626..3611009 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  MHH79_RS18695 (MHH79_18695) - 3611184..3611594 (+) 411 WP_015251046.1 YwpF-like family protein -
  MHH79_RS18700 (MHH79_18700) - 3611734..3612372 (-) 639 WP_015483797.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12531.22 Da        Isoelectric Point: 8.4694

>NTDB_id=969142 MHH79_RS18685 WP_340034808.1 3610208..3610549(-) (ssbB) [Bacillus sp. FSL K6-0993]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCRLWRKTAENTALYCQKGSLIGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=969142 MHH79_RS18685 WP_340034808.1 3610208..3610549(-) (ssbB) [Bacillus sp. FSL K6-0993]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATTGAAGCTGATTACGTCAATTGCAGACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCATCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

97.345

100

0.973
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398

Multiple sequence alignment