Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MKX71_RS18695 Genome accession   NZ_CP150256
Coordinates   3623458..3623799 (-) Length   113 a.a.
NCBI ID   WP_198878443.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3618458..3628799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX71_RS18680 (MKX71_18680) - 3618702..3621470 (+) 2769 WP_339231480.1 DEAD/DEAH box helicase -
  MKX71_RS18685 (MKX71_18685) ywpJ 3621595..3622452 (-) 858 WP_015251049.1 phosphatase YwpJ -
  MKX71_RS18690 (MKX71_18690) glcR 3622458..3623234 (-) 777 WP_015251048.1 transcriptional regulator GlcR -
  MKX71_RS18695 (MKX71_18695) ssbB 3623458..3623799 (-) 342 WP_198878443.1 single-stranded DNA-binding protein SsbB Machinery gene
  MKX71_RS18700 (MKX71_18700) ywpG 3623876..3624259 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  MKX71_RS18705 (MKX71_18705) - 3624434..3624844 (+) 411 WP_003227794.1 YwpF-like family protein -
  MKX71_RS18710 (MKX71_18710) - 3624984..3625622 (-) 639 WP_015251045.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12492.14 Da        Isoelectric Point: 7.8150

>NTDB_id=968181 MKX71_RS18695 WP_198878443.1 3623458..3623799(-) (ssbB) [Bacillus sp. FSL M8-0071]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENTEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=968181 MKX71_RS18695 WP_198878443.1 3623458..3623799(-) (ssbB) [Bacillus sp. FSL M8-0071]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACACGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment