Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OO774_RS02795 | Genome accession | NZ_AP026763 |
| Coordinates | 572810..573259 (-) | Length | 149 a.a. |
| NCBI ID | WP_264904470.1 | Uniprot ID | - |
| Organism | Vibrio sp. STUT-A11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 567810..578259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO774_RS02775 (VspSTUT11_04670) | coaE | 568315..568929 (-) | 615 | WP_264904463.1 | dephospho-CoA kinase | - |
| OO774_RS02780 (VspSTUT11_04680) | pilD | 568930..569799 (-) | 870 | WP_264904464.1 | A24 family peptidase | Machinery gene |
| OO774_RS02785 (VspSTUT11_04690) | pilC | 569867..571090 (-) | 1224 | WP_264904466.1 | type II secretion system F family protein | Machinery gene |
| OO774_RS02790 (VspSTUT11_04700) | pilB | 571121..572806 (-) | 1686 | WP_264904468.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OO774_RS02795 (VspSTUT11_04710) | pilA | 572810..573259 (-) | 450 | WP_264904470.1 | pilin | Machinery gene |
| OO774_RS02800 (VspSTUT11_04720) | nadC | 573518..574405 (-) | 888 | WP_264904472.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OO774_RS02805 (VspSTUT11_04730) | ampD | 574498..575043 (+) | 546 | WP_264904474.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OO774_RS02810 (VspSTUT11_04740) | pdhR | 575454..576221 (+) | 768 | WP_264904476.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15965.33 Da Isoelectric Point: 9.4576
>NTDB_id=96807 OO774_RS02795 WP_264904470.1 572810..573259(-) (pilA) [Vibrio sp. STUT-A11]
MKSNKHKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVAKSELGAGLATITSIRTNVEDYMVTNGSFPDNSAAGQKTED
LGVIQPQNGTISFDKEKGNILLTFAATGNSPDVNNAKIALKRETGGKWKCQATPAKKLLPKSCEQDANL
MKSNKHKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVAKSELGAGLATITSIRTNVEDYMVTNGSFPDNSAAGQKTED
LGVIQPQNGTISFDKEKGNILLTFAATGNSPDVNNAKIALKRETGGKWKCQATPAKKLLPKSCEQDANL
Nucleotide
Download Length: 450 bp
>NTDB_id=96807 OO774_RS02795 WP_264904470.1 572810..573259(-) (pilA) [Vibrio sp. STUT-A11]
ATGAAGTCAAATAAACACAAAAAACAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTGGCGGTGATTGGTGTTTT
AGCTGCTATCGCCATTCCTCAATATCAAAACTATGTAGCTAAGTCTGAGCTGGGAGCTGGTTTAGCCACAATTACCTCTA
TACGAACAAATGTAGAAGATTATATGGTAACAAATGGGTCTTTCCCGGACAACTCTGCGGCAGGTCAAAAAACTGAGGAC
CTTGGGGTAATTCAACCCCAAAATGGAACTATCTCATTTGACAAAGAAAAAGGTAATATACTTCTTACTTTCGCTGCTAC
AGGAAATAGTCCAGACGTTAATAATGCGAAAATAGCGCTTAAGAGAGAAACTGGGGGTAAATGGAAGTGCCAGGCAACCC
CTGCAAAAAAACTCCTTCCAAAGTCATGTGAACAAGATGCTAACTTGTAA
ATGAAGTCAAATAAACACAAAAAACAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTGGCGGTGATTGGTGTTTT
AGCTGCTATCGCCATTCCTCAATATCAAAACTATGTAGCTAAGTCTGAGCTGGGAGCTGGTTTAGCCACAATTACCTCTA
TACGAACAAATGTAGAAGATTATATGGTAACAAATGGGTCTTTCCCGGACAACTCTGCGGCAGGTCAAAAAACTGAGGAC
CTTGGGGTAATTCAACCCCAAAATGGAACTATCTCATTTGACAAAGAAAAAGGTAATATACTTCTTACTTTCGCTGCTAC
AGGAAATAGTCCAGACGTTAATAATGCGAAAATAGCGCTTAAGAGAGAAACTGGGGGTAAATGGAAGTGCCAGGCAACCC
CTGCAAAAAAACTCCTTCCAAAGTCATGTGAACAAGATGCTAACTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
49.068 |
100 |
0.53 |
| pilA | Vibrio cholerae C6706 |
49.068 |
100 |
0.53 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.068 |
100 |
0.53 |
| pilA | Pseudomonas aeruginosa PAK |
43.624 |
100 |
0.436 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
44.444 |
90.604 |
0.403 |
| pilA | Acinetobacter baumannii strain A118 |
41.135 |
94.631 |
0.389 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.194 |
96.644 |
0.369 |