Detailed information NTG0096804

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OO774_RS02780
• Genome accession: NZ_AP026763
• Coordinates: 568930..569799 (-)
• Length: 289 a.a.
• NCBI ID: WP_264904464.1
• Uniprot ID: -
• Organism: Vibrio sp. STUT-A11
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 563930..574799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO774_RS02745 (VspSTUT11_04610)	rpsP	564610..564858 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
OO774_RS02750 (VspSTUT11_04620)	rimM	564889..565437 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
OO774_RS02755 (VspSTUT11_04630)	trmD	565465..566226 (+)	762	WP_264904452.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OO774_RS02760 (VspSTUT11_04640)	rplS	566268..566621 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
OO774_RS02765 (VspSTUT11_04650)	yacG	567267..567461 (-)	195	WP_264904458.1	DNA gyrase inhibitor YacG	-
OO774_RS02770 (VspSTUT11_04660)	zapD	567548..568288 (-)	741	WP_264904461.1	cell division protein ZapD	-
OO774_RS02775 (VspSTUT11_04670)	coaE	568315..568929 (-)	615	WP_264904463.1	dephospho-CoA kinase	-
OO774_RS02780 (VspSTUT11_04680)	pilD	568930..569799 (-)	870	WP_264904464.1	A24 family peptidase	Machinery gene
OO774_RS02785 (VspSTUT11_04690)	pilC	569867..571090 (-)	1224	WP_264904466.1	type II secretion system F family protein	Machinery gene
OO774_RS02790 (VspSTUT11_04700)	pilB	571121..572806 (-)	1686	WP_264904468.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OO774_RS02795 (VspSTUT11_04710)	pilA	572810..573259 (-)	450	WP_264904470.1	pilin	Machinery gene
OO774_RS02800 (VspSTUT11_04720)	nadC	573518..574405 (-)	888	WP_264904472.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32338.39 Da
• Isoelectric Point: 6.4408

>NTDB_id=96804 OO774_RS02780 WP_264904464.1 568930..569799(-) (pilD) [Vibrio sp. STUT-A11]
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEALTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILITATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=96804 OO774_RS02780 WP_264904464.1 568930..569799(-) (pilD) [Vibrio sp. STUT-A11]
ATGGAAGTATTTCAGTACTACCCATGGTTATTCGTGATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTTAA
TGTCGTTATCTATCGCCTGCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATATAATA
TTGAATCACCCAAAGAAGCACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAGTGCGGTACTCCGATTCGTATTCGC
GATAACATCCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCACCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACTGCAGCCTGCTCCGGCTACGTTGCATTTCATTTTGGCTTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCACAGCGACATTTATCGATCTCGATACCATGCTGCTCCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAGTTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCATGGCTGGGTTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTTAGCTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.194	99.654	0.879
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	53.069	95.848	0.509
pilD	Acinetobacter nosocomialis M2	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446