Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OO774_RS02785 Genome accession   NZ_AP026763
Coordinates   569867..571090 (-) Length   407 a.a.
NCBI ID   WP_264904466.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 564867..576090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS02750 (VspSTUT11_04620) rimM 564889..565437 (+) 549 WP_005379964.1 ribosome maturation factor RimM -
  OO774_RS02755 (VspSTUT11_04630) trmD 565465..566226 (+) 762 WP_264904452.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OO774_RS02760 (VspSTUT11_04640) rplS 566268..566621 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  OO774_RS02765 (VspSTUT11_04650) yacG 567267..567461 (-) 195 WP_264904458.1 DNA gyrase inhibitor YacG -
  OO774_RS02770 (VspSTUT11_04660) zapD 567548..568288 (-) 741 WP_264904461.1 cell division protein ZapD -
  OO774_RS02775 (VspSTUT11_04670) coaE 568315..568929 (-) 615 WP_264904463.1 dephospho-CoA kinase -
  OO774_RS02780 (VspSTUT11_04680) pilD 568930..569799 (-) 870 WP_264904464.1 A24 family peptidase Machinery gene
  OO774_RS02785 (VspSTUT11_04690) pilC 569867..571090 (-) 1224 WP_264904466.1 type II secretion system F family protein Machinery gene
  OO774_RS02790 (VspSTUT11_04700) pilB 571121..572806 (-) 1686 WP_264904468.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OO774_RS02795 (VspSTUT11_04710) pilA 572810..573259 (-) 450 WP_264904470.1 pilin Machinery gene
  OO774_RS02800 (VspSTUT11_04720) nadC 573518..574405 (-) 888 WP_264904472.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OO774_RS02805 (VspSTUT11_04730) ampD 574498..575043 (+) 546 WP_264904474.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45210.61 Da        Isoelectric Point: 10.3501

>NTDB_id=96805 OO774_RS02785 WP_264904466.1 569867..571090(-) (pilC) [Vibrio sp. STUT-A11]
MKTTTPQLKNFRWKGINSAGKKTSGKTLAMSEVEVRERLNAQHIKIKKLKKSSISFLTKLSHRIKGKDITVFTRQISTML
ITGVPLVQALKLVSNNHKKAEMKSILMSITRAVEAGTPMSKAMRTASSHFDSLYTDLISTGELSGNLAEVFERLATYREK
SEELRAKVIKALIYPMMVILVALGVSYLMLTQVIPEFEKMFVGFGAELPWFTRQVLDLSAWMQNWGSFIALGTLSLVISA
RILVKRSDSFRLMMDRAILKVPVLGAMLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNLHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRLDEMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=96805 OO774_RS02785 WP_264904466.1 569867..571090(-) (pilC) [Vibrio sp. STUT-A11]
ATGAAAACGACGACCCCACAACTCAAGAACTTCCGCTGGAAAGGCATTAATAGCGCAGGAAAAAAGACCTCAGGGAAAAC
GCTGGCCATGAGCGAAGTGGAAGTGCGCGAACGCCTCAACGCCCAGCATATAAAAATAAAAAAACTGAAAAAAAGCAGTA
TTTCCTTTTTAACCAAACTCAGCCATCGCATAAAAGGCAAAGACATCACCGTTTTCACTCGACAAATCTCTACCATGCTG
ATTACAGGCGTCCCACTCGTTCAGGCTTTGAAACTGGTCTCCAATAACCATAAAAAAGCCGAGATGAAGTCTATTTTAAT
GAGCATAACTAGGGCGGTTGAAGCGGGCACGCCTATGTCTAAAGCGATGCGCACCGCCAGCTCACACTTTGACTCGCTAT
ATACTGATCTAATCTCGACCGGAGAACTGTCAGGTAACTTGGCGGAAGTATTTGAACGACTGGCCACTTATCGTGAGAAA
AGCGAGGAACTCAGAGCCAAAGTCATAAAAGCCCTAATCTACCCAATGATGGTCATTTTGGTTGCGTTGGGCGTTTCCTA
TCTCATGCTCACGCAAGTTATTCCCGAGTTTGAAAAAATGTTCGTCGGCTTTGGTGCTGAATTACCTTGGTTTACCAGAC
AAGTACTAGACTTGTCTGCGTGGATGCAAAATTGGGGTTCATTCATCGCTCTTGGGACACTTAGCCTAGTTATATCAGCA
AGAATACTGGTAAAACGTTCTGATTCCTTTCGCTTGATGATGGATCGAGCCATATTGAAAGTTCCCGTTCTTGGCGCAAT
GTTGTCCAAGGCTGCGATTGCTAAATTTAGCCGAACCCTGGCCACCAGCTTTAGTGCTGGTATCCCAATCCTGACCAGCT
TAAAAACCACCTCAAAAACATCAGGAAACCTGCACTATCAGCTAGCAGTAGAAGAGGTCTATCGTGATACAGCAGCTGGT
ATGCCAATGTATGTCGCGATGCGTAACTGTGATGTTTTCCCGGAACTCGTACTACAAATGGTAATGATTGGAGAAGAATC
AGGTAGGCTCGATGAGATGCTCAATAAAGTGGCGACCATCTATGAATTCGAAGTAGACAATACCGTCGATAACCTGAGTA
AGATTCTCGAGCCGCTGATTATCGTTTTTCTTGGTGTGGTCGTTGGCGGATTAGTGACAGCAATGTACCTGCCAATCTTT
AACTTAATGAGCGTATTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

84.029

100

0.84
  pilC Vibrio cholerae strain A1552

73.086

99.509

0.727
  pilC Acinetobacter baylyi ADP1

42.04

98.771

0.415
  pilC Legionella pneumophila strain ERS1305867

41.523

100

0.415
  pilG Neisseria gonorrhoeae MS11

40.695

99.017

0.403
  pilC Acinetobacter baumannii D1279779

40.594

99.263

0.403
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilG Neisseria meningitidis 44/76-A

40.447

99.017

0.4

Multiple sequence alignment