Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | NST29_RS16575 | Genome accession | NZ_CP150194 |
| Coordinates | 3303060..3303407 (-) | Length | 115 a.a. |
| NCBI ID | WP_209005376.1 | Uniprot ID | A0A679FNV7 |
| Organism | Geobacillus sp. FSL W8-0026 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3298060..3308407
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST29_RS16555 (NST29_16555) | - | 3299235..3300014 (-) | 780 | WP_033018403.1 | hypothetical protein | - |
| NST29_RS16560 (NST29_16560) | - | 3300049..3301392 (-) | 1344 | WP_172418710.1 | peptidoglycan-binding protein | - |
| NST29_RS16565 (NST29_16565) | - | 3301572..3302057 (-) | 486 | WP_061912231.1 | hypothetical protein | - |
| NST29_RS16570 (NST29_16570) | - | 3302266..3302673 (+) | 408 | WP_339232446.1 | helix-turn-helix transcriptional regulator | - |
| NST29_RS16575 (NST29_16575) | ssbB | 3303060..3303407 (-) | 348 | WP_209005376.1 | single-stranded DNA-binding protein | Machinery gene |
| NST29_RS16580 (NST29_16580) | - | 3303671..3304123 (+) | 453 | WP_172418713.1 | YwpF-like family protein | - |
| NST29_RS16585 (NST29_16585) | - | 3304540..3305199 (-) | 660 | WP_033018394.1 | class D sortase | - |
| NST29_RS16590 (NST29_16590) | - | 3305206..3306120 (-) | 915 | WP_108209734.1 | processed acidic surface protein | - |
| NST29_RS16595 (NST29_16595) | - | 3306695..3308071 (-) | 1377 | WP_033018391.1 | aspartate kinase | - |
Sequence
Protein
Download Length: 115 a.a. Molecular weight: 12829.60 Da Isoelectric Point: 9.1364
>NTDB_id=965800 NST29_RS16575 WP_209005376.1 3303060..3303407(-) (ssbB) [Geobacillus sp. FSL W8-0026]
MINQVVLVGRLTKDPELRYTADGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANFCRKGSMVAVTGRIQTR
RYDNKDGQRVYVTEVVAQSVQFLHSGKQPEWPEHV
MINQVVLVGRLTKDPELRYTADGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANFCRKGSMVAVTGRIQTR
RYDNKDGQRVYVTEVVAQSVQFLHSGKQPEWPEHV
Nucleotide
Download Length: 348 bp
>NTDB_id=965800 NST29_RS16575 WP_209005376.1 3303060..3303407(-) (ssbB) [Geobacillus sp. FSL W8-0026]
ATGATCAATCAAGTCGTGTTGGTCGGTCGATTGACGAAGGATCCGGAACTTCGCTATACGGCCGACGGCGCCGCTGTAGC
AACGGTTACGCTGGCAGTGGCAAGAAATTTCCGCAATGCGGAGGGAGGGATTGATGCCGACTTCGTTCCTTGTGTTTTAT
GGCGGAAAACAGCCGAGCATACCGCCAATTTCTGCCGAAAAGGCTCAATGGTGGCGGTGACCGGGCGAATTCAGACGCGC
CGCTACGACAATAAAGACGGTCAGCGCGTCTATGTCACCGAGGTGGTGGCGCAGTCCGTTCAATTTCTACACTCCGGCAA
ACAACCTGAATGGCCGGAGCACGTCTGA
ATGATCAATCAAGTCGTGTTGGTCGGTCGATTGACGAAGGATCCGGAACTTCGCTATACGGCCGACGGCGCCGCTGTAGC
AACGGTTACGCTGGCAGTGGCAAGAAATTTCCGCAATGCGGAGGGAGGGATTGATGCCGACTTCGTTCCTTGTGTTTTAT
GGCGGAAAACAGCCGAGCATACCGCCAATTTCTGCCGAAAAGGCTCAATGGTGGCGGTGACCGGGCGAATTCAGACGCGC
CGCTACGACAATAAAGACGGTCAGCGCGTCTATGTCACCGAGGTGGTGGCGCAGTCCGTTCAATTTCTACACTCCGGCAA
ACAACCTGAATGGCCGGAGCACGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.961 |
89.565 |
0.609 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
66.346 |
90.435 |
0.6 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.905 |
91.304 |
0.565 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.148 |
93.913 |
0.452 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.86 |
99.13 |
0.435 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.86 |
99.13 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.982 |
99.13 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
44.444 |
93.913 |
0.417 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.346 |
90.435 |
0.374 |