Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSQ22_RS16915 Genome accession   NZ_CP150187
Coordinates   3302455..3302814 (-) Length   119 a.a.
NCBI ID   WP_171355633.1    Uniprot ID   -
Organism   Geobacillus sp. FSL K6-3411     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3297455..3307814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ22_RS16895 (NSQ22_16895) - 3299008..3300417 (-) 1410 WP_339264652.1 peptidoglycan-binding protein -
  NSQ22_RS16900 (NSQ22_16900) - 3300412..3300891 (-) 480 Protein_3256 peptidoglycan-binding protein -
  NSQ22_RS16905 (NSQ22_16905) - 3301201..3301701 (-) 501 WP_008880384.1 hypothetical protein -
  NSQ22_RS16910 (NSQ22_16910) - 3301915..3302325 (+) 411 WP_029761384.1 helix-turn-helix transcriptional regulator -
  NSQ22_RS16915 (NSQ22_16915) ssbB 3302455..3302814 (-) 360 WP_171355633.1 single-stranded DNA-binding protein Machinery gene
  NSQ22_RS16920 (NSQ22_16920) - 3303086..3303526 (+) 441 WP_008880387.1 YwpF-like family protein -
  NSQ22_RS16925 (NSQ22_16925) - 3303713..3304384 (-) 672 WP_008880388.1 class D sortase -
  NSQ22_RS16930 (NSQ22_16930) - 3304391..3305359 (-) 969 WP_081157468.1 processed acidic surface protein -
  NSQ22_RS16935 (NSQ22_16935) - 3305469..3306845 (-) 1377 WP_339263918.1 aspartate kinase -
  NSQ22_RS16940 (NSQ22_16940) - 3306996..3307430 (-) 435 WP_008880391.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13496.40 Da        Isoelectric Point: 9.0849

>NTDB_id=965499 NSQ22_RS16915 WP_171355633.1 3302455..3302814(-) (ssbB) [Geobacillus sp. FSL K6-3411]
MHRNMINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGR
IQTRRYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=965499 NSQ22_RS16915 WP_171355633.1 3302455..3302814(-) (ssbB) [Geobacillus sp. FSL K6-3411]
ATGCACCGGAACATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGG
GACGGCCGTTACAACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTC
CGTGTGTCCTATGGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGA
ATCCAGACGCGCCGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCT
CCACTCCGGCAAAGTGCGAGAATGGCCGGAGCACGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

92.437

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

87.395

0.546
  ssb Latilactobacillus sakei subsp. sakei 23K

60.952

88.235

0.538
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.368

95.798

0.454
  ssbA Streptococcus mutans UA159

44.737

95.798

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

95.798

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

95.798

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae D39

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae R6

42.982

95.798

0.412
  ssbB/cilA Streptococcus mitis SK321

42.982

95.798

0.412
  ssbB Lactococcus lactis subsp. cremoris KW2

41.346

87.395

0.361

Multiple sequence alignment