Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   NYE79_RS02470 Genome accession   NZ_CP150168
Coordinates   475653..476048 (+) Length   131 a.a.
NCBI ID   WP_000282469.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 470653..481048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS02445 (NYE79_02445) - 472351..473424 (+) 1074 WP_049478927.1 N-acetylmuramoyl-L-alanine amidase family protein -
  NYE79_RS02450 (NYE79_02450) - 473518..473817 (+) 300 WP_002879788.1 DUF4651 domain-containing protein -
  NYE79_RS02455 (NYE79_02455) - 473814..474131 (+) 318 WP_000586556.1 thioredoxin family protein -
  NYE79_RS02460 (NYE79_02460) ytpR 474146..474772 (+) 627 WP_049520664.1 YtpR family tRNA-binding protein -
  NYE79_RS02465 (NYE79_02465) - 474814..475575 (+) 762 WP_001107787.1 SDR family NAD(P)-dependent oxidoreductase -
  NYE79_RS02470 (NYE79_02470) ssbB/cilA 475653..476048 (+) 396 WP_000282469.1 single-stranded DNA-binding protein Machinery gene
  NYE79_RS02475 (NYE79_02475) groES 476357..476641 (+) 285 WP_000917326.1 co-chaperone GroES -
  NYE79_RS02480 (NYE79_02480) groL 476657..478279 (+) 1623 WP_000031555.1 chaperonin GroEL -
  NYE79_RS02485 (NYE79_02485) - 478391..479158 (+) 768 WP_216728883.1 epoxyqueuosine reductase QueH -
  NYE79_RS02490 (NYE79_02490) - 479229..479762 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  NYE79_RS02495 (NYE79_02495) recX 479851..480627 (-) 777 WP_084848918.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14879.84 Da        Isoelectric Point: 5.9409

>NTDB_id=964599 NYE79_RS02470 WP_000282469.1 475653..476048(+) (ssbB/cilA) [Streptococcus sp. FSL W8-0197]
MYNKVIMIGRLTSTPELHKTNNDKSVARVTIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=964599 NYE79_RS02470 WP_000282469.1 475653..476048(+) (ssbB/cilA) [Streptococcus sp. FSL W8-0197]
ATGTATAATAAAGTTATCATGATCGGGCGCTTGACGTCTACACCAGAATTGCACAAAACAAACAATGACAAGTCAGTAGC
GCGAGTAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGGGAACGTGAAGCTGACTTTGTCAATCTTGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTCCTTGCCACAGGATTCCAACTTTTGGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGACAGGATTTGGCAGATTTGGTCTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae Rx1

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae D39

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae R6

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.183

100

0.962
  ssbB/cilA Streptococcus mitis SK321

95.42

100

0.954
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.296

82.443

0.382

Multiple sequence alignment