Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSQ12_RS19230 Genome accession   NZ_CP150160
Coordinates   3702645..3702986 (-) Length   113 a.a.
NCBI ID   WP_029726038.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3697645..3707986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS19215 (NSQ12_19215) - 3697887..3700655 (+) 2769 WP_029726036.1 DEAD/DEAH box helicase -
  NSQ12_RS19220 (NSQ12_19220) ywpJ 3700781..3701638 (-) 858 WP_029726037.1 phosphatase YwpJ -
  NSQ12_RS19225 (NSQ12_19225) glcR 3701644..3702420 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  NSQ12_RS19230 (NSQ12_19230) ssbB 3702645..3702986 (-) 342 WP_029726038.1 single-stranded DNA-binding protein SsbB Machinery gene
  NSQ12_RS19235 (NSQ12_19235) ywpG 3703063..3703446 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  NSQ12_RS19240 (NSQ12_19240) - 3703621..3704031 (+) 411 WP_003227794.1 YwpF-like family protein -
  NSQ12_RS19245 (NSQ12_19245) - 3704171..3704563 (-) 393 Protein_3731 class A sortase -
  NSQ12_RS19250 (NSQ12_19250) - 3704550..3704915 (-) 366 WP_259407082.1 prealbumin-like fold domain-containing protein -
  NSQ12_RS19255 (NSQ12_19255) - 3704823..3705659 (+) 837 WP_029726040.1 histidine kinase -
  NSQ12_RS19260 (NSQ12_19260) mscL 3705706..3706101 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  NSQ12_RS19265 (NSQ12_19265) fabZ 3706173..3706598 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSQ12_RS19270 (NSQ12_19270) rapD 3706790..3707854 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12471.12 Da        Isoelectric Point: 7.8468

>NTDB_id=964100 NSQ12_RS19230 WP_029726038.1 3702645..3702986(-) (ssbB) [Bacillus sp. PS95]
MFNHVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=964100 NSQ12_RS19230 WP_029726038.1 3702645..3702986(-) (ssbB) [Bacillus sp. PS95]
ATGTTCAATCATGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACACGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment