Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NST79_RS18940 Genome accession   NZ_CP150159
Coordinates   3658034..3658375 (-) Length   113 a.a.
NCBI ID   WP_212060299.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3653034..3663375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS18925 (NST79_18925) - 3653278..3656046 (+) 2769 WP_129010254.1 DEAD/DEAH box helicase -
  NST79_RS18930 (NST79_18930) ywpJ 3656171..3657028 (-) 858 WP_212060300.1 phosphatase YwpJ -
  NST79_RS18935 (NST79_18935) glcR 3657034..3657810 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  NST79_RS18940 (NST79_18940) ssbB 3658034..3658375 (-) 342 WP_212060299.1 single-stranded DNA-binding protein Machinery gene
  NST79_RS18945 (NST79_18945) ywpG 3658452..3658835 (-) 384 WP_029318736.1 DynA interaction protein YwpG -
  NST79_RS18950 (NST79_18950) - 3659010..3659420 (+) 411 WP_003227794.1 YwpF-like family protein -
  NST79_RS18955 (NST79_18955) - 3659560..3660198 (-) 639 WP_015251045.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12490.16 Da        Isoelectric Point: 7.8150

>NTDB_id=964020 NST79_RS18940 WP_212060299.1 3658034..3658375(-) (ssbB) [Bacillus sp. PS196]
MFNQVMLVGRLTKDPDLRYTSVGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=964020 NST79_RS18940 WP_212060299.1 3658034..3658375(-) (ssbB) [Bacillus sp. PS196]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGTCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389