Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OO986_RS15225 Genome accession   NZ_AP026552
Coordinates   3244054..3245157 (-) Length   367 a.a.
NCBI ID   WP_061059019.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3239054..3250157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS15195 (VV208B2_28380) - 3239113..3239670 (-) 558 WP_013570891.1 L-threonylcarbamoyladenylate synthase -
  OO986_RS15200 (VV208B2_28390) purE 3239851..3240336 (+) 486 WP_011079087.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OO986_RS15205 (VV208B2_28400) - 3240340..3241473 (+) 1134 WP_011079086.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OO986_RS15210 (VV208B2_28410) - 3241603..3242940 (+) 1338 WP_263178924.1 IS4-like element ISVvu3 family transposase -
  OO986_RS15215 (VV208B2_28420) - 3242979..3243548 (-) 570 WP_108695039.1 type I DNA topoisomerase -
  OO986_RS15220 (VV208B2_28430) - 3243572..3244051 (-) 480 WP_026050366.1 DUF494 family protein -
  OO986_RS15225 (VV208B2_28440) dprA 3244054..3245157 (-) 1104 WP_061059019.1 DNA-processing protein DprA Machinery gene
  OO986_RS15230 (VV208B2_28450) - 3245157..3246254 (-) 1098 WP_108695038.1 LysM peptidoglycan-binding domain-containing protein -
  OO986_RS15235 (VV208B2_28460) def 3246393..3246905 (+) 513 WP_011079081.1 peptide deformylase -
  OO986_RS15240 (VV208B2_28470) fmt 3246937..3247884 (+) 948 WP_045598843.1 methionyl-tRNA formyltransferase -
  OO986_RS15245 (VV208B2_28480) rsmB 3247968..3249248 (+) 1281 WP_108679004.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39490.99 Da        Isoelectric Point: 6.9045

>NTDB_id=96386 OO986_RS15225 WP_061059019.1 3244054..3245157(-) (dprA) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHIL
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMQGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQHIYPARHKGLAARIGQQGALVSEFRPNTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPQLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=96386 OO986_RS15225 WP_061059019.1 3244054..3245157(-) (dprA) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGAGTCAAGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACGCCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTATTCCCAAGAGCAGCTACTGTCGCTGGGGCTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCCCTTCAATGGCAGCAGCTCTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCCTATATCCGCCGTTGCTTAAGGAAACGGCTTCACCGCCTTGCCAACTGTTTGTACAGGGTGATCC
TCATTGTTTAACCAAGCCACAAATTGCTCTGGTGGGGAGTCGTCATGCGACCATGCAAGGGTTGCAACATGCCCGCGACT
TTGCGGCTCAACTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGACGGCGGGAGGCGAAACCGTTGCCGTTCTTGGTTCGGGCTTTCAACATATTTATCCCGCTCGCCACAAAGGCCT
TGCCGCGAGAATTGGTCAGCAAGGTGCGCTGGTTTCGGAGTTTCGTCCCAATACGAAAGCCAAAGCCGAACATTTTCCTC
GTCGAAATCGAATCATTAGCGGCTTGTCTCTGGGTGTTTTGGTGGTCGAAGCGGCAGAGAAAAGCGGTTCTTTGATTACC
GCCCGTTATGCCGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAATGCACGCGGCGGAAA
CTTGCTGATAAAAAGCGGAGCGTGTTTGGTCACTGGGGTTGAAGATGTGCTGAGTGAAGTGCAAACCTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACGGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTAGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

69.697

98.91

0.689
  dprA Vibrio cholerae strain A1552

58.491

100

0.591
  dprA Glaesserella parasuis strain SC1401

45.013

100

0.455
  dprA Legionella pneumophila strain ERS1305867

44.321

98.365

0.436
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.783

100

0.409
  dprA Neisseria meningitidis strain C311

37.783

100

0.409
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.401
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.398
  dprA Acinetobacter baylyi ADP1

38.235

100

0.39
  dprA Acinetobacter baumannii D1279779

41.39

90.191

0.373
  dprA Acinetobacter baumannii strain A118

40.785

90.191

0.368

Multiple sequence alignment