Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WDJ59_RS14105 Genome accession   NZ_CP149939
Coordinates   2438502..2438945 (+) Length   147 a.a.
NCBI ID   WP_339060771.1    Uniprot ID   -
Organism   Tepidibacillus marianensis strain LSZ-M11000     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2433502..2443945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDJ59_RS14085 - 2434962..2435284 (+) 323 Protein_2745 DUF485 domain-containing protein -
  WDJ59_RS14090 - 2435290..2436858 (+) 1569 WP_339060768.1 cation acetate symporter -
  WDJ59_RS14095 ychF 2436982..2438082 (+) 1101 WP_339060769.1 redox-regulated ATPase YchF -
  WDJ59_RS14100 rpsF 2438193..2438480 (+) 288 WP_339060770.1 30S ribosomal protein S6 -
  WDJ59_RS14105 ssbA 2438502..2438945 (+) 444 WP_339060771.1 single-stranded DNA-binding protein Machinery gene
  WDJ59_RS14110 rpsR 2439013..2439240 (+) 228 WP_339060772.1 30S ribosomal protein S18 -
  WDJ59_RS14115 - 2439419..2439730 (+) 312 WP_339060773.1 MazG-like family protein -
  WDJ59_RS14120 - 2439743..2440669 (+) 927 WP_339060774.1 DUF2232 domain-containing protein -
  WDJ59_RS14125 - 2440662..2442614 (+) 1953 WP_339060775.1 DHH family phosphoesterase -
  WDJ59_RS14130 rplI 2442611..2443056 (+) 446 Protein_2754 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16647.37 Da        Isoelectric Point: 4.7980

>NTDB_id=962302 WDJ59_RS14105 WP_339060771.1 2438502..2438945(+) (ssbA) [Tepidibacillus marianensis strain LSZ-M11000]
MLNRVILIGRLTKDPELRYTPTGVAVTTFTLAVDRNYTNQQGQREADFINVVTWRGLAENVANYLKKGRLTALEGRLQIR
NYENNEGKRVYVTEVVADNVRFLESSNSSRNHSGDNGPQNKPNDRFEQDPFADDGSPIDISDDDLPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=962302 WDJ59_RS14105 WP_339060771.1 2438502..2438945(+) (ssbA) [Tepidibacillus marianensis strain LSZ-M11000]
ATGTTAAACCGTGTCATATTAATCGGAAGGTTAACCAAGGATCCAGAATTACGGTATACTCCTACTGGTGTTGCCGTAAC
GACATTTACACTTGCGGTTGACCGAAACTACACGAATCAACAAGGTCAGCGTGAAGCTGATTTTATTAACGTTGTTACTT
GGAGAGGCTTAGCAGAAAATGTGGCCAATTACTTGAAAAAGGGTCGTCTAACAGCATTAGAGGGACGTCTCCAAATCCGT
AATTATGAAAATAATGAAGGAAAACGTGTTTATGTCACCGAAGTTGTTGCTGACAATGTTCGTTTCTTAGAATCTTCTAA
TTCTTCACGAAATCATTCAGGAGATAATGGACCTCAGAATAAACCGAATGACCGGTTTGAACAAGATCCCTTTGCAGATG
ATGGGAGTCCAATCGATATTTCTGATGATGACTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.673
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.585
  ssb Neisseria gonorrhoeae MS11

34.857

100

0.415
  ssb Neisseria meningitidis MC58

34.857

100

0.415
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.816

100

0.408
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.731

70.748

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.609

90.476

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

42.857

90.476

0.388
  ssbB/cilA Streptococcus mitis SK321

42.857

90.476

0.388
  ssbB/cilA Streptococcus pneumoniae R6

42.857

90.476

0.388
  ssbB/cilA Streptococcus pneumoniae Rx1

42.857

90.476

0.388
  ssbB/cilA Streptococcus pneumoniae D39

42.857

90.476

0.388