Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   WHO18_RS19640 Genome accession   NZ_CP148128
Coordinates   3739821..3740162 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3734821..3745162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS19625 hepA 3735064..3737832 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  WHO18_RS19630 ywpJ 3737958..3738815 (-) 858 WP_003242946.1 phosphatase YwpJ -
  WHO18_RS19635 glcR 3738821..3739597 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  WHO18_RS19640 ssbB 3739821..3740162 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  WHO18_RS19645 ywpG 3740239..3740622 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  WHO18_RS19650 ywpF 3740797..3741207 (+) 411 WP_003227794.1 YwpF-like family protein -
  WHO18_RS19655 - 3741347..3741739 (-) 393 Protein_3813 class A sortase -
  WHO18_RS19660 - 3741726..3742091 (-) 366 WP_236820093.1 prealbumin-like fold domain-containing protein -
  WHO18_RS19665 ywpD 3741999..3742835 (+) 837 WP_003227787.1 histidine kinase -
  WHO18_RS19670 mscL 3742882..3743274 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  WHO18_RS19675 fabZ 3743347..3743772 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  WHO18_RS19680 rapD 3743964..3745028 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=951479 WHO18_RS19640 WP_003227798.1 3739821..3740162(-) (ssbB) [Bacillus subtilis isolate FELIX_MS620]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=951479 WHO18_RS19640 WP_003227798.1 3739821..3740162(-) (ssbB) [Bacillus subtilis isolate FELIX_MS620]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389