Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   WHO64_RS19600 Genome accession   NZ_CP148117
Coordinates   3739526..3739867 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis isolate FELIX_MS509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3734526..3744867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO64_RS19585 hepA 3734769..3737537 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  WHO64_RS19590 ywpJ 3737663..3738520 (-) 858 WP_003242946.1 phosphatase YwpJ -
  WHO64_RS19595 glcR 3738526..3739302 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  WHO64_RS19600 ssbB 3739526..3739867 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  WHO64_RS19605 ywpG 3739944..3740327 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  WHO64_RS19610 ywpF 3740502..3740912 (+) 411 WP_003227794.1 YwpF-like family protein -
  WHO64_RS19615 - 3741052..3741444 (-) 393 Protein_3805 class A sortase -
  WHO64_RS19620 - 3741431..3741820 (-) 390 WP_009968292.1 prealbumin-like fold domain-containing protein -
  WHO64_RS19625 ywpD 3741704..3742540 (+) 837 WP_003227787.1 histidine kinase -
  WHO64_RS19630 mscL 3742587..3742979 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  WHO64_RS19635 fabZ 3743052..3743477 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  WHO64_RS19640 rapD 3743669..3744733 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=951067 WHO64_RS19600 WP_003227798.1 3739526..3739867(-) (ssbB) [Bacillus subtilis isolate FELIX_MS509]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=951067 WHO64_RS19600 WP_003227798.1 3739526..3739867(-) (ssbB) [Bacillus subtilis isolate FELIX_MS509]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389