Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   WDW98_RS18680 Genome accession   NZ_CP147720
Coordinates   3942231..3942638 (-) Length   135 a.a.
NCBI ID   WP_024956772.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain CGMCC 1.1788     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3937231..3947638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW98_RS18670 pilR 3938780..3940153 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  WDW98_RS18675 pilB 3940274..3942007 (-) 1734 WP_024956773.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WDW98_RS18680 pilA/pilAI 3942231..3942638 (-) 408 WP_024956772.1 pilin Machinery gene
  WDW98_RS18685 - 3942791..3943228 (-) 438 WP_024956771.1 pilin -
  WDW98_RS18690 pilC 3943581..3944840 (+) 1260 WP_338795057.1 type II secretion system F family protein Machinery gene
  WDW98_RS18695 - 3944848..3945711 (+) 864 WP_012481100.1 A24 family peptidase -
  WDW98_RS18700 coaE 3945723..3946334 (+) 612 WP_024956769.1 dephospho-CoA kinase -
  WDW98_RS18705 - 3946581..3946967 (-) 387 WP_024956768.1 hypothetical protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14252.43 Da        Isoelectric Point: 6.2109

>NTDB_id=948205 WDW98_RS18680 WP_024956772.1 3942231..3942638(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain CGMCC 1.1788]
MNTQKGFTLIELMIVVAIIAILAAIAAVAFQPYVVRTQLAAALADITPGKTKVEILVNENRPASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=948205 WDW98_RS18680 WP_024956772.1 3942231..3942638(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain CGMCC 1.1788]
ATGAACACGCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTTGCGGCGATTGCGGC
TGTGGCATTTCAGCCATACGTCGTGCGCACCCAGTTGGCGGCGGCACTTGCGGATATCACGCCGGGAAAGACCAAGGTGG
AAATCCTCGTCAACGAGAACCGTCCGGCCAGTCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

50.735

100

0.511
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.382

100

0.437
  pilA Pseudomonas aeruginosa PAK

38.255

100

0.422
  pilA Acinetobacter baumannii strain A118

40.876

100

0.415
  comP Acinetobacter baylyi ADP1

35.57

100

0.393
  pilA Vibrio cholerae C6706

34.694

100

0.378
  pilA Vibrio cholerae strain A1552

34.694

100

0.378
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.694

100

0.378
  pilA Ralstonia pseudosolanacearum GMI1000

36.842

98.519

0.363
  pilA2 Legionella pneumophila strain ERS1305867

35.507

100

0.363