Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WDW98_RS18690 Genome accession   NZ_CP147720
Coordinates   3943581..3944840 (+) Length   419 a.a.
NCBI ID   WP_338795057.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain CGMCC 1.1788     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3938581..3949840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW98_RS18670 pilR 3938780..3940153 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  WDW98_RS18675 pilB 3940274..3942007 (-) 1734 WP_024956773.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WDW98_RS18680 pilA/pilAI 3942231..3942638 (-) 408 WP_024956772.1 pilin Machinery gene
  WDW98_RS18685 - 3942791..3943228 (-) 438 WP_024956771.1 pilin -
  WDW98_RS18690 pilC 3943581..3944840 (+) 1260 WP_338795057.1 type II secretion system F family protein Machinery gene
  WDW98_RS18695 - 3944848..3945711 (+) 864 WP_012481100.1 A24 family peptidase -
  WDW98_RS18700 coaE 3945723..3946334 (+) 612 WP_024956769.1 dephospho-CoA kinase -
  WDW98_RS18705 - 3946581..3946967 (-) 387 WP_024956768.1 hypothetical protein -
  WDW98_RS18710 - 3947462..3948829 (-) 1368 WP_032963415.1 HAMP domain-containing sensor histidine kinase -
  WDW98_RS18715 - 3948792..3949469 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45978.44 Da        Isoelectric Point: 10.1071

>NTDB_id=948206 WDW98_RS18690 WP_338795057.1 3943581..3944840(+) (pilC) [Stenotrophomonas maltophilia strain CGMCC 1.1788]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVVSATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=948206 WDW98_RS18690 WP_338795057.1 3943581..3944840(+) (pilC) [Stenotrophomonas maltophilia strain CGMCC 1.1788]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGTGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCGAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAAG
CAGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTCGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCGGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGTAAGCGCCACCGGCAATACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Acinetobacter baylyi ADP1

50.86

97.136

0.494
  pilC Legionella pneumophila strain ERS1305867

51.378

95.227

0.489
  pilC Acinetobacter baumannii D1279779

49.874

94.749

0.473
  pilG Neisseria gonorrhoeae MS11

44.389

95.704

0.425
  pilG Neisseria meningitidis 44/76-A

44.14

95.704

0.422
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

41.646

95.704

0.399
  pilC Thermus thermophilus HB27

37.562

95.943

0.36