Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WAA17_RS19960 Genome accession   NZ_CP147000
Coordinates   4007412..4007930 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis isolate K8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4002412..4012930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA17_RS19930 (WAA17_19930) - 4003608..4003988 (-) 381 WP_004392999.1 VOC family protein -
  WAA17_RS19935 (WAA17_19935) - 4004045..4004983 (-) 939 WP_024086045.1 LacI family DNA-binding transcriptional regulator -
  WAA17_RS19940 (WAA17_19940) xth 4005046..4005804 (-) 759 WP_024086046.1 exodeoxyribonuclease III -
  WAA17_RS19945 (WAA17_19945) - 4005801..4006358 (-) 558 WP_015387410.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  WAA17_RS19950 (WAA17_19950) - 4006355..4006936 (-) 582 WP_015387409.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  WAA17_RS19955 (WAA17_19955) rpsR 4007129..4007368 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  WAA17_RS19960 (WAA17_19960) ssbA 4007412..4007930 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  WAA17_RS19965 (WAA17_19965) rpsF 4007970..4008257 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  WAA17_RS19970 (WAA17_19970) ychF 4008369..4009469 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  WAA17_RS19975 (WAA17_19975) - 4009596..4011599 (-) 2004 WP_015387408.1 molybdopterin-dependent oxidoreductase -
  WAA17_RS19980 (WAA17_19980) - 4011646..4011852 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=945561 WAA17_RS19960 WP_004392979.1 4007412..4007930(-) (ssbA) [Bacillus velezensis isolate K8]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=945561 WAA17_RS19960 WP_004392979.1 4007412..4007930(-) (ssbA) [Bacillus velezensis isolate K8]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGTTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378