Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V9L13_RS16330 Genome accession   NZ_CP146986
Coordinates   3626248..3627465 (+) Length   405 a.a.
NCBI ID   WP_338800028.1    Uniprot ID   -
Organism   Pseudomonas sp. RSB 5.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3621248..3632465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L13_RS16310 (V9L13_16310) - 3622655..3622951 (+) 297 WP_338800025.1 DUF2845 domain-containing protein -
  V9L13_RS16315 (V9L13_16315) - 3623221..3623577 (-) 357 WP_025108814.1 BON domain-containing protein -
  V9L13_RS16320 (V9L13_16320) pilA 3623876..3624316 (-) 441 WP_338800026.1 pilin Machinery gene
  V9L13_RS16325 (V9L13_16325) pilB 3624545..3626245 (+) 1701 WP_338800027.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V9L13_RS16330 (V9L13_16330) pilC 3626248..3627465 (+) 1218 WP_338800028.1 type II secretion system F family protein Machinery gene
  V9L13_RS16335 (V9L13_16335) pilD 3627467..3628339 (+) 873 WP_338800029.1 A24 family peptidase Machinery gene
  V9L13_RS16340 (V9L13_16340) coaE 3628336..3628959 (+) 624 WP_338800030.1 dephospho-CoA kinase -
  V9L13_RS16345 (V9L13_16345) yacG 3628956..3629153 (+) 198 WP_003228296.1 DNA gyrase inhibitor YacG -
  V9L13_RS16350 (V9L13_16350) - 3629156..3629371 (-) 216 WP_003228298.1 hypothetical protein -
  V9L13_RS16355 (V9L13_16355) - 3629437..3630126 (-) 690 WP_338800031.1 energy-coupling factor ABC transporter permease -
  V9L13_RS16360 (V9L13_16360) - 3630245..3630871 (+) 627 WP_003228301.1 DUF1780 domain-containing protein -
  V9L13_RS16365 (V9L13_16365) - 3630868..3631395 (+) 528 WP_003228303.1 MOSC domain-containing protein -
  V9L13_RS16370 (V9L13_16370) - 3631447..3631620 (+) 174 WP_003228304.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44025.89 Da        Isoelectric Point: 10.0979

>NTDB_id=945374 V9L13_RS16330 WP_338800028.1 3626248..3627465(+) (pilC) [Pseudomonas sp. RSB 5.4]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGINPGKVRKKSTSLLSLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPAAVVLVAMVVTGILLVKVVPQFQAVFSGFGAELPAFTLMVISISEFMQQWWWIVLGALIAAVFGIR
HALKKSQALRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVATGM
QLNFSMRNTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=945374 V9L13_RS16330 WP_338800028.1 3626248..3627465(+) (pilC) [Pseudomonas sp. RSB 5.4]
ATGGCGGTCAAGGCAGCGAAAATCAGCATCTACGCCTGGGAAGGCACGGATCGCAAAGGCAGCAAGGTCACGGGCGAGTT
GAGCGGGCAGAACCCCGCGCTGATCAAGGCTCAGCTGCGCAAACAAGGAATCAATCCAGGCAAGGTGCGCAAGAAGTCCA
CCTCCTTGCTCAGCCTCGGCAAACGCATCAAGGCCCAGGACATCGCCCTGTTCACGCGGCAGATGGCAACCATGATGAAG
GCCGGCGTACCGCTGTTGCAGTCGTTCGACATTATTGGCGAAGGCTTCGATAACCCGGCGATGCGCAAACTGGTGGACGA
GGTGAAGCAAGAGGTGGCCGCCGGCAACAGCTTCGCTGCGGCCCTGCGCAAGAAGCCGCAGTATTTCGATGAGTTGTATT
GCAACCTGGTGGATGCCGGCGAGCAATCCGGTGCACTCGATACGTTGCTGGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTATCCCGCCGCCGTGGTACTGGTGGCGATGGTGGTCACGGGGAT
TTTGCTGGTGAAAGTGGTGCCGCAATTCCAGGCGGTATTCTCCGGTTTCGGTGCTGAACTGCCGGCCTTTACCCTGATGG
TGATCAGCATCTCGGAGTTCATGCAGCAATGGTGGTGGATAGTGCTCGGCGCCCTGATTGCGGCGGTGTTCGGCATCCGT
CATGCGCTGAAGAAATCCCAAGCCTTGCGCGACCGCAAAGACACCTGGCTGCTGAAGCTGCCGCTGGTGGGCACGCTGAT
GTACAAATCGGCGGTGGCGCGATTCGCCCGCACCCTGTCGACCACCTTCGCCGCTGGCGTACCGCTGGTGGAAGCACTGG
ATTCGGTGGCCGGCGCCACCGGCAACGTGGTGTTCAAACGTGCCGTGCTGCGTATCCGCCAGGACGTCGCCACCGGCATG
CAGCTGAATTTTTCCATGCGCAACACCGGGGTCTTCCCCAACATGGCGGTGCAGATGACCGCCATCGGTGAGGAGTCGGG
CGCACTGGATGACATGCTCGACAAGGTCGCCGGTTTTTATGAGGACGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTCGGGGTCATCGTCGGCGGGCTGGTCGTGGCCATGTACCTGCCGATTTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.568

100

0.746
  pilC Acinetobacter baumannii D1279779

59.559

100

0.6
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

44.03

99.259

0.437
  pilC Vibrio cholerae strain A1552

44.697

97.778

0.437
  pilG Neisseria meningitidis 44/76-A

43.532

99.259

0.432
  pilC Vibrio campbellii strain DS40M4

41.379

100

0.415
  pilC Thermus thermophilus HB27

38.404

99.012

0.38