Detailed information NTG0945374

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACFXAC_RS13035
• Genome accession: NZ_CP170720
• Coordinates: 2689496..2690758 (-)
• Length: 420 a.a.
• NCBI ID: WP_003152620.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5006
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2684496..2695758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAC_RS13020 (ACFXAC_13020)	yihA	2684573..2685160 (-)	588	WP_007612895.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
ACFXAC_RS13025 (ACFXAC_13025)	lon	2685157..2687481 (-)	2325	WP_007612896.1	endopeptidase La	-
ACFXAC_RS13030 (ACFXAC_13030)	lonB	2687681..2689345 (-)	1665	WP_053573153.1	ATP-dependent protease LonB	-
ACFXAC_RS13035 (ACFXAC_13035)	clpX	2689496..2690758 (-)	1263	WP_003152620.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACFXAC_RS13040 (ACFXAC_13040)	tig	2691030..2692304 (-)	1275	WP_003152618.1	trigger factor	-
ACFXAC_RS13045 (ACFXAC_13045)	ddcA	2692521..2693525 (-)	1005	WP_053573152.1	DNA damage checkpoint antagonist DdcA	-
ACFXAC_RS13050 (ACFXAC_13050)	leuD	2693642..2694241 (-)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
ACFXAC_RS13055 (ACFXAC_13055)	leuC	2694257..2695675 (-)	1419	WP_003152606.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46188.97 Da
• Isoelectric Point: 4.5163

>NTDB_id=945374 ACFXAC_RS13035 WP_003152620.1 2689496..2690758(-) (clpX) [Bacillus amyloliquefaciens strain JP5006]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEGEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=945374 ACFXAC_RS13035 WP_003152620.1 2689496..2690758(-) (clpX) [Bacillus amyloliquefaciens strain JP5006]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGTATTATTTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCGTCCATTACACGTGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAACATC
CTGTTCATTTGCGGCGGTGCATTTGACGGCATCGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGGCGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCGCCGCGTCTTGTATTAAAAGACGGTACTGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569