Detailed information NTG0945375

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V9L13_RS16335
• Genome accession: NZ_CP146986
• Coordinates: 3627467..3628339 (+)
• Length: 290 a.a.
• NCBI ID: WP_338800029.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RSB 5.4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3622467..3633339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V9L13_RS16310 (V9L13_16310)	-	3622655..3622951 (+)	297	WP_338800025.1	DUF2845 domain-containing protein	-
V9L13_RS16315 (V9L13_16315)	-	3623221..3623577 (-)	357	WP_025108814.1	BON domain-containing protein	-
V9L13_RS16320 (V9L13_16320)	pilA	3623876..3624316 (-)	441	WP_338800026.1	pilin	Machinery gene
V9L13_RS16325 (V9L13_16325)	pilB	3624545..3626245 (+)	1701	WP_338800027.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V9L13_RS16330 (V9L13_16330)	pilC	3626248..3627465 (+)	1218	WP_338800028.1	type II secretion system F family protein	Machinery gene
V9L13_RS16335 (V9L13_16335)	pilD	3627467..3628339 (+)	873	WP_338800029.1	A24 family peptidase	Machinery gene
V9L13_RS16340 (V9L13_16340)	coaE	3628336..3628959 (+)	624	WP_338800030.1	dephospho-CoA kinase	-
V9L13_RS16345 (V9L13_16345)	yacG	3628956..3629153 (+)	198	WP_003228296.1	DNA gyrase inhibitor YacG	-
V9L13_RS16350 (V9L13_16350)	-	3629156..3629371 (-)	216	WP_003228298.1	hypothetical protein	-
V9L13_RS16355 (V9L13_16355)	-	3629437..3630126 (-)	690	WP_338800031.1	energy-coupling factor ABC transporter permease	-
V9L13_RS16360 (V9L13_16360)	-	3630245..3630871 (+)	627	WP_003228301.1	DUF1780 domain-containing protein	-
V9L13_RS16365 (V9L13_16365)	-	3630868..3631395 (+)	528	WP_003228303.1	MOSC domain-containing protein	-
V9L13_RS16370 (V9L13_16370)	-	3631447..3631620 (+)	174	WP_003228304.1	DUF3094 family protein	-
V9L13_RS16375 (V9L13_16375)	-	3631684..3632982 (+)	1299	WP_150367937.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32098.42 Da
• Isoelectric Point: 7.7103

>NTDB_id=945375 V9L13_RS16335 WP_338800029.1 3627467..3628339(+) (pilD) [Pseudomonas sp. RSB 5.4]
MPIDELFSLYPLAFVLAALLLGLVVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSQCPHCGHLIR
AWENIPLLSYLLLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVFTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLFAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=945375 V9L13_RS16335 WP_338800029.1 3627467..3628339(+) (pilD) [Pseudomonas sp. RSB 5.4]
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTCGTACTCGCCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTTCTCAACGTGCTGGTCTGGCGTCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTCCTTGGCC
TGCCGAGCGAAACGCCGCTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCGCACTGCGGCCACCTGATTCGG
GCGTGGGAGAACATTCCACTGCTCAGCTACCTGCTGTTGCGCGGACGCTGTTCGGCGTGTGCCGCCCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCGTCGCCTGGCATCTGGGGTTCGGCTGGCCGGCCGGTC
TGTTGATCGTCTTCACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCTCTATTCGCGGCGCTATGGGGCGCGGT
GGCCGGTTACATGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCATCGCTGGTGGGG
GCGATTGTCGGGGTGATTCTGTTGCGTCTGCGCGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.255	97.241	0.528
pilD	Vibrio campbellii strain DS40M4	52.837	97.241	0.514
pilD	Acinetobacter baumannii D1279779	48.905	94.483	0.462
pilD	Acinetobacter nosocomialis M2	48.905	94.483	0.462
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459