Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V6Z53_RS28730 Genome accession   NZ_CP145732
Coordinates   6272016..6273233 (+) Length   405 a.a.
NCBI ID   WP_338583099.1    Uniprot ID   -
Organism   Pseudomonas sp. MAG733B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6267016..6278233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z53_RS28710 (V6Z53_28710) - 6268436..6268732 (+) 297 WP_338586586.1 DUF2845 domain-containing protein -
  V6Z53_RS28715 (V6Z53_28715) - 6269002..6269358 (-) 357 WP_338583094.1 BON domain-containing protein -
  V6Z53_RS28720 (V6Z53_28720) pilA 6269668..6270087 (-) 420 WP_338583097.1 pilin Machinery gene
  V6Z53_RS28725 (V6Z53_28725) pilB 6270313..6272013 (+) 1701 WP_338583098.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V6Z53_RS28730 (V6Z53_28730) pilC 6272016..6273233 (+) 1218 WP_338583099.1 type II secretion system F family protein Machinery gene
  V6Z53_RS28735 (V6Z53_28735) pilD 6273235..6274107 (+) 873 WP_338583101.1 A24 family peptidase Machinery gene
  V6Z53_RS28740 (V6Z53_28740) coaE 6274104..6274727 (+) 624 WP_338583103.1 dephospho-CoA kinase -
  V6Z53_RS28745 (V6Z53_28745) yacG 6274724..6274924 (+) 201 WP_060543361.1 DNA gyrase inhibitor YacG -
  V6Z53_RS28750 (V6Z53_28750) - 6274960..6275649 (-) 690 WP_338583107.1 energy-coupling factor ABC transporter permease -
  V6Z53_RS28755 (V6Z53_28755) - 6275837..6276079 (+) 243 WP_338583108.1 DUF2790 domain-containing protein -
  V6Z53_RS28760 (V6Z53_28760) - 6276088..6277356 (-) 1269 WP_338583109.1 OprD family porin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44274.14 Da        Isoelectric Point: 9.7981

>NTDB_id=939868 V6Z53_RS28730 WP_338583099.1 6272016..6273233(+) (pilC) [Pseudomonas sp. MAG733B]
MAVKAAKISIYAWEGTDRKGTKVTGELSGQNPALIKAQLRKQGINPGKVRKKSVSLFNVGTRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLLVVLVAIVVTGILLVKVVPQFQSVFEGFGAELPAFTVMVIGLSRFMQDWWWMMLGVLIVAIFALR
HAFRTSQAFRDRTDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTSGIFPNMAVQMTAIGEESGALDDMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=939868 V6Z53_RS28730 WP_338583099.1 6272016..6273233(+) (pilC) [Pseudomonas sp. MAG733B]
ATGGCGGTCAAGGCAGCGAAAATCAGCATTTACGCCTGGGAAGGCACCGACCGCAAAGGCACGAAAGTCACCGGTGAGTT
GAGCGGGCAAAACCCGGCGCTGATCAAGGCACAACTGCGCAAACAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
TCTCGCTGTTCAACGTCGGCACGCGCATCAAGGCCCAGGACATTGCCCTGTTCACGCGCCAGATGGCGACCATGATGAAA
GCCGGCGTACCGCTGTTGCAGTCGTTCGACATTATCGGCGAAGGCTTCGATAACCCGGCCATGCGTACGCTGGTGGACGA
GGTCAAACAGGAAGTCGCGGCCGGCAACAGCTTCGCCGCGGCCCTGCGCAAAAAGCCGCAATACTTCGATGAGCTGTACT
GCAATCTGGTGGATGCCGGTGAACAGGCCGGCGCGCTGGACACCCTGCTGGAACGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTATCCGCTGCTGGTGGTGTTGGTCGCGATCGTTGTCACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAATTTCAGTCGGTGTTCGAAGGGTTTGGCGCCGAATTGCCCGCCTTCACTGTGATGG
TCATTGGTCTGTCGCGATTCATGCAGGACTGGTGGTGGATGATGCTCGGCGTGCTGATCGTCGCGATCTTCGCGCTGCGT
CACGCCTTCAGGACGTCTCAGGCCTTTCGCGACCGAACGGACGCCTGGCTACTGAAGCTGCCGCTGGTGGGCACCTTGAT
GTACAAATCCGCCGTGGCGCGTTTTGCCCGCACGTTGTCGACGACTTTCGCCGCCGGCGTGCCGCTGGTGGAAGCCCTGG
AATCGGTGGCCGGCGCCACCGGCAACATCGTGTTCAAACGCGCGGTGCTGCGCATCAAGCAGGACGTTTCGACGGGCATG
CAGCTGAATTTTTCAATGCGCACCTCGGGCATTTTTCCGAACATGGCGGTGCAGATGACCGCCATTGGCGAAGAGTCCGG
CGCACTGGACGACATGCTCGACAAGGTCGCGGGTTTTTACGAGGACGAGGTGGACAATATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATTGTCGGCGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.58

100

0.736
  pilC Acinetobacter baylyi ADP1

58.824

100

0.593
  pilC Acinetobacter baumannii D1279779

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

43.035

99.259

0.427
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Vibrio cholerae strain A1552

43.434

97.778

0.425
  pilC Vibrio campbellii strain DS40M4

40.887

100

0.41
  pilC Thermus thermophilus HB27

38.155

99.012

0.378