Detailed information NTG0939869

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V6Z53_RS28735
• Genome accession: NZ_CP145732
• Coordinates: 6273235..6274107 (+)
• Length: 290 a.a.
• NCBI ID: WP_338583101.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MAG733B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6268235..6279107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6Z53_RS28710 (V6Z53_28710)	-	6268436..6268732 (+)	297	WP_338586586.1	DUF2845 domain-containing protein	-
V6Z53_RS28715 (V6Z53_28715)	-	6269002..6269358 (-)	357	WP_338583094.1	BON domain-containing protein	-
V6Z53_RS28720 (V6Z53_28720)	pilA	6269668..6270087 (-)	420	WP_338583097.1	pilin	Machinery gene
V6Z53_RS28725 (V6Z53_28725)	pilB	6270313..6272013 (+)	1701	WP_338583098.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V6Z53_RS28730 (V6Z53_28730)	pilC	6272016..6273233 (+)	1218	WP_338583099.1	type II secretion system F family protein	Machinery gene
V6Z53_RS28735 (V6Z53_28735)	pilD	6273235..6274107 (+)	873	WP_338583101.1	A24 family peptidase	Machinery gene
V6Z53_RS28740 (V6Z53_28740)	coaE	6274104..6274727 (+)	624	WP_338583103.1	dephospho-CoA kinase	-
V6Z53_RS28745 (V6Z53_28745)	yacG	6274724..6274924 (+)	201	WP_060543361.1	DNA gyrase inhibitor YacG	-
V6Z53_RS28750 (V6Z53_28750)	-	6274960..6275649 (-)	690	WP_338583107.1	energy-coupling factor ABC transporter permease	-
V6Z53_RS28755 (V6Z53_28755)	-	6275837..6276079 (+)	243	WP_338583108.1	DUF2790 domain-containing protein	-
V6Z53_RS28760 (V6Z53_28760)	-	6276088..6277356 (-)	1269	WP_338583109.1	OprD family porin	-
V6Z53_RS28765 (V6Z53_28765)	-	6277373..6278593 (-)	1221	WP_338583110.1	benzoate/H(+) symporter BenE family transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32391.80 Da
• Isoelectric Point: 8.2563

>NTDB_id=939869 V6Z53_RS28735 WP_338583101.1 6273235..6274107(+) (pilD) [Pseudomonas sp. MAG733B]
MPLNEILLQYPLAFVVIAGVIGLLVGSFLNVLVWRLPKMLEREWRVQAHEILGLPGETPLPTFNLFLPHSQCPHCNHRIR
AWENIPLLSFAFLRGRCSACATPISKRYPLTELACGLLSAFIAWHFGFGWQACMAMLLTWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSLDLFVPLHDALWGAIAGYMALWSVFWLFKLMTGKDGMGHGDFKLLALFGAWGGWQVLPLTILLSSLVG
AVIGVIYLRLRKAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=939869 V6Z53_RS28735 WP_338583101.1 6273235..6274107(+) (pilD) [Pseudomonas sp. MAG733B]
ATGCCCTTGAACGAAATCCTGCTCCAATACCCGCTGGCATTTGTTGTCATCGCGGGAGTGATTGGCCTATTGGTGGGCAG
CTTCCTAAATGTGCTGGTCTGGCGCCTGCCGAAAATGCTCGAACGCGAGTGGCGCGTTCAGGCCCATGAGATCCTCGGGC
TGCCCGGTGAAACCCCGCTGCCGACCTTCAACCTGTTCCTGCCCCACTCCCAGTGTCCACATTGCAACCACCGGATCCGT
GCCTGGGAAAATATTCCGCTACTGAGTTTCGCGTTTCTGCGGGGACGCTGCTCCGCTTGCGCGACACCGATCAGCAAACG
TTATCCACTGACCGAACTGGCCTGCGGCCTGTTGTCTGCGTTCATTGCCTGGCACTTCGGTTTCGGCTGGCAAGCCTGTA
TGGCGATGCTGCTGACCTGGGGTCTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTGCTGGTG
CTGCCGTTGATGTGGCTGGGGCTGATCGTCAACAGTCTCGACCTGTTCGTACCGCTGCATGACGCGTTGTGGGGCGCCAT
TGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATGACCGGCAAGGACGGCATGGGCCATGGTGATT
TCAAGTTACTGGCGCTGTTTGGCGCCTGGGGCGGCTGGCAGGTTTTGCCGCTGACCATCCTCCTTTCATCCTTGGTGGGG
GCCGTTATCGGCGTGATTTACCTGCGCCTGCGCAAGGCTAAAACCTCGACGCCGATTCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.837	97.241	0.514
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448
pilD	Acinetobacter baumannii D1279779	45.52	96.207	0.438
pilD	Acinetobacter nosocomialis M2	45.52	96.207	0.438