Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ORY85_RS09990 Genome accession   NZ_CP145606
Coordinates   2079461..2079748 (+) Length   95 a.a.
NCBI ID   WP_274570865.1    Uniprot ID   A0A9X4E8H1
Organism   Neisseria leonii strain 3986     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2074461..2084748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS09960 (ORY85_09960) - 2074641..2075414 (-) 774 WP_274570871.1 TatD family hydrolase -
  ORY85_RS09965 (ORY85_09965) holB 2075405..2076388 (-) 984 WP_274570870.1 DNA polymerase III subunit delta' -
  ORY85_RS09970 (ORY85_09970) - 2076536..2076862 (-) 327 WP_274570869.1 rhodanese-like domain-containing protein -
  ORY85_RS09975 (ORY85_09975) - 2076870..2077526 (-) 657 WP_274570868.1 protein-L-isoaspartate O-methyltransferase -
  ORY85_RS09980 (ORY85_09980) - 2077588..2078073 (-) 486 WP_274570867.1 GAF domain-containing protein -
  ORY85_RS09985 (ORY85_09985) - 2078353..2078835 (+) 483 WP_274570866.1 disulfide bond formation protein B -
  ORY85_RS09990 (ORY85_09990) comE 2079461..2079748 (+) 288 WP_274570865.1 helix-hairpin-helix domain-containing protein Machinery gene
  ORY85_RS09995 (ORY85_09995) - 2079836..2080120 (-) 285 WP_274570864.1 DNA-binding transcriptional regulator -
  ORY85_RS10000 (ORY85_10000) - 2080395..2080913 (+) 519 WP_274570863.1 pilin -
  ORY85_RS10005 (ORY85_10005) - 2081753..2082637 (+) 885 WP_274570862.1 alpha/beta hydrolase -
  ORY85_RS10010 (ORY85_10010) - 2082852..2083574 (-) 723 WP_274570861.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ORY85_RS10015 (ORY85_10015) - 2083641..2084429 (+) 789 WP_274570859.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9841.67 Da        Isoelectric Point: 10.5766

>NTDB_id=939018 ORY85_RS09990 WP_274570865.1 2079461..2079748(+) (comE) [Neisseria leonii strain 3986]
MIKFLLALVAALSMGWAVAAVNINTASAEELKALPGIGAAKAQAIVDYRKENGQFKTVDDLKKVKGIGDAVLAKLKDQAT
VGNAAPPKKAVPAKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=939018 ORY85_RS09990 WP_274570865.1 2079461..2079748(+) (comE) [Neisseria leonii strain 3986]
ATGATCAAATTTTTGTTGGCATTGGTAGCGGCTTTAAGTATGGGCTGGGCCGTAGCCGCCGTGAATATCAACACGGCAAG
TGCAGAAGAGCTGAAAGCCCTGCCGGGTATCGGTGCAGCCAAGGCGCAAGCTATAGTGGATTACCGAAAAGAAAACGGAC
AGTTCAAGACGGTTGACGACTTGAAGAAAGTGAAAGGGATTGGCGATGCTGTATTGGCGAAACTGAAAGATCAGGCTACG
GTCGGTAATGCCGCGCCACCGAAAAAAGCAGTACCGGCCAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

60.87

96.842

0.589
  comE Neisseria gonorrhoeae MS11

60.87

96.842

0.589
  comE Neisseria gonorrhoeae MS11

60.87

96.842

0.589
  comE Neisseria gonorrhoeae MS11

60.87

96.842

0.589
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.844

81.053

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

61.667

63.158

0.389
  comEA Vibrio cholerae C6706

66.071

58.947

0.389
  comEA Vibrio cholerae strain A1552

66.071

58.947

0.389
  comEA Bacillus subtilis subsp. subtilis str. 168

50.725

72.632

0.368
  comEA/celA/cilE Streptococcus pneumoniae R6

57.377

64.211

0.368
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

57.377

64.211

0.368
  comEA/celA/cilE Streptococcus mitis NCTC 12261

57.377

64.211

0.368
  comEA/celA/cilE Streptococcus pneumoniae Rx1

57.377

64.211

0.368
  comEA/celA/cilE Streptococcus pneumoniae D39

57.377

64.211

0.368