Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SNR28_RS26525 Genome accession   NZ_CP145311
Coordinates   3614158..3615273 (-) Length   371 a.a.
NCBI ID   WP_375751965.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3609158..3620273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS26495 (SNR28_26455) hemF 3609676..3610578 (-) 903 WP_375751953.1 oxygen-dependent coproporphyrinogen oxidase -
  SNR28_RS26500 (SNR28_26460) - 3610581..3611138 (-) 558 WP_375751955.1 L-threonylcarbamoyladenylate synthase -
  SNR28_RS26505 (SNR28_26465) purE 3611325..3611810 (+) 486 WP_375751957.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  SNR28_RS26510 (SNR28_26470) - 3611816..3612943 (+) 1128 WP_375751959.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SNR28_RS26515 (SNR28_26475) - 3613087..3613650 (-) 564 WP_375751961.1 type I DNA topoisomerase -
  SNR28_RS26520 (SNR28_26480) - 3613682..3614155 (-) 474 WP_375751963.1 DUF494 family protein -
  SNR28_RS26525 (SNR28_26485) dprA 3614158..3615273 (-) 1116 WP_375751965.1 DNA-processing protein DprA Machinery gene
  SNR28_RS26530 (SNR28_26490) def 3615534..3616046 (+) 513 WP_375751966.1 peptide deformylase -
  SNR28_RS26535 (SNR28_26495) fmt 3616057..3617004 (+) 948 WP_375751968.1 methionyl-tRNA formyltransferase -
  SNR28_RS26540 (SNR28_26500) rsmB 3617072..3618352 (+) 1281 WP_375751970.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  SNR28_RS26545 (SNR28_26505) trkA 3618411..3619787 (+) 1377 WP_375751971.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40274.03 Da        Isoelectric Point: 5.9349

>NTDB_id=938424 SNR28_RS26525 WP_375751965.1 3614158..3615273(-) (dprA) [Vibrio sp. HN007]
MKNKCENELIAWLTLSFTPGLGGKRLNRLLSFDSPQNLVTYSSERLFGLGLKSEQVQYIKSGSTKDVEVSLEWLGKETDN
HIVTLQGNAYPQLLKEISAYPPLLFVKGNLELLQEPQVAIVGSRNASIDGLHSAKSFAKDLAGKGLTITSGLALGVDGYA
HDGALSCDGDTIAVLGSGLYNIYPVRHRKLAGRIIEQGGAIVSEFRPNALPRPEHFPRRNRIISGLSLGVLVVEAAERSG
SLITARYALEQGREVFALPGSINSPGARGCNLLIKEGACLVQSSSDILKELNGLLSWSLNQQKDLFEHEDDNEELPFPQL
LANVGVEAIPVDILAERTNIPVQEVMMQLLELELQGHVAAVSGGYIRTRRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=938424 SNR28_RS26525 WP_375751965.1 3614158..3615273(-) (dprA) [Vibrio sp. HN007]
ATGAAAAACAAATGCGAGAATGAGTTGATAGCATGGTTAACACTTAGCTTTACACCTGGCTTGGGTGGTAAAAGGCTGAA
TCGGTTGTTGAGCTTTGATTCTCCTCAAAATCTGGTGACATACTCATCTGAGCGGCTGTTTGGGTTAGGTCTTAAATCTG
AGCAAGTTCAGTATATTAAAAGTGGCTCAACGAAGGATGTTGAAGTAAGCCTTGAGTGGCTGGGTAAAGAAACTGATAAC
CATATAGTGACGCTTCAAGGTAATGCTTACCCCCAGTTACTAAAAGAAATAAGTGCCTACCCACCACTACTTTTCGTCAA
GGGAAATTTGGAACTACTGCAAGAACCACAAGTCGCAATTGTAGGTAGCAGAAATGCAAGTATCGATGGATTACACAGTG
CCAAATCCTTTGCGAAAGACCTGGCAGGCAAAGGGCTGACTATCACCAGTGGCTTAGCTCTTGGTGTAGATGGCTATGCC
CACGATGGAGCGCTTAGTTGCGATGGTGACACAATAGCTGTATTAGGATCTGGCTTATACAATATCTACCCTGTTAGACA
TAGAAAGTTGGCTGGAAGAATAATAGAGCAGGGCGGAGCTATTGTTTCTGAGTTCAGGCCCAATGCTTTACCAAGGCCAG
AACACTTTCCGCGCAGAAATAGAATAATCAGTGGACTGTCTTTAGGCGTTCTGGTGGTGGAGGCGGCAGAGCGGAGTGGA
TCTCTGATAACGGCGAGATATGCTCTTGAGCAAGGGAGAGAAGTTTTTGCCCTACCTGGCTCAATAAATAGTCCTGGAGC
CCGTGGGTGTAACTTACTTATTAAGGAAGGAGCCTGTCTGGTTCAATCTTCAAGTGACATCCTGAAAGAGCTCAATGGAT
TGTTAAGCTGGTCATTAAACCAGCAAAAAGATCTGTTTGAGCACGAAGACGACAATGAGGAATTGCCATTTCCCCAACTC
TTAGCTAACGTAGGAGTAGAAGCCATACCAGTTGATATTCTGGCAGAGAGGACCAATATCCCTGTTCAGGAAGTCATGAT
GCAGCTTCTGGAGCTCGAGCTTCAAGGGCATGTTGCCGCTGTATCCGGCGGTTATATTCGAACGAGGAGGGGTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.151

100

0.642
  dprA Vibrio cholerae strain A1552

57.297

99.73

0.571
  dprA Glaesserella parasuis strain SC1401

45.646

100

0.466
  dprA Neisseria meningitidis MC58

39.899

100

0.426
  dprA Neisseria meningitidis strain C311

39.899

100

0.426
  dprA Neisseria gonorrhoeae MS11

39.594

100

0.42
  dprA Haemophilus influenzae Rd KW20

45.294

91.644

0.415
  dprA Neisseria gonorrhoeae strain FA1090

39.086

100

0.415
  dprA Legionella pneumophila strain ERS1305867

46.626

87.871

0.41
  dprA Acinetobacter baumannii strain A118

42.566

92.453

0.394
  dprA Acinetobacter baumannii D1279779

42.442

92.722

0.394
  dprA Acinetobacter baylyi ADP1

42.09

90.296

0.38
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.5

99.191

0.372