Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   V5F86_RS18400 Genome accession   NZ_CP145137
Coordinates   3636929..3637270 (-) Length   113 a.a.
NCBI ID   WP_014115447.1    Uniprot ID   A0A9Q4HGB8
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3631929..3642270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS18385 (V5F86_18390) - 3632166..3634934 (+) 2769 WP_338443356.1 DEAD/DEAH box helicase -
  V5F86_RS18390 (V5F86_18395) ywpJ 3635065..3635922 (-) 858 WP_338443357.1 phosphatase YwpJ -
  V5F86_RS18395 (V5F86_18400) glcR 3635928..3636704 (-) 777 WP_014115446.1 transcriptional regulator GlcR -
  V5F86_RS18400 (V5F86_18405) ssbB 3636929..3637270 (-) 342 WP_014115447.1 single-stranded DNA-binding protein SsbB Machinery gene
  V5F86_RS18405 (V5F86_18410) ywpG 3637347..3637730 (-) 384 WP_014115448.1 DynA interaction protein YwpG -
  V5F86_RS18410 (V5F86_18415) - 3637907..3638317 (+) 411 WP_268455880.1 YwpF-like family protein -
  V5F86_RS18415 (V5F86_18420) - 3638459..3639097 (-) 639 WP_338443358.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12463.14 Da        Isoelectric Point: 7.8150

>NTDB_id=937448 V5F86_RS18400 WP_014115447.1 3636929..3637270(-) (ssbB) [Bacillus spizizenii strain kcgeb_sc]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVTVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=937448 V5F86_RS18400 WP_014115447.1 3636929..3637270(-) (ssbB) [Bacillus spizizenii strain kcgeb_sc]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAATCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGACTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGGCGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGCGTTACCGTATATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

97.345

100

0.973
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.113

93.805

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

46.226

93.805

0.434
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398