Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NUH87_RS21725 Genome accession   NZ_CP144470
Coordinates   4757376..4758593 (-) Length   405 a.a.
NCBI ID   WP_338522621.1    Uniprot ID   -
Organism   Pseudomonas batumici strain Koz11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4752376..4763593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUH87_RS21690 (NUH87_21690) - 4753682..4753855 (-) 174 WP_338522616.1 DUF3094 family protein -
  NUH87_RS21695 (NUH87_21695) - 4753923..4754549 (-) 627 WP_040071051.1 DUF1780 domain-containing protein -
  NUH87_RS21700 (NUH87_21700) - 4754704..4755390 (+) 687 WP_338522617.1 energy-coupling factor ABC transporter permease -
  NUH87_RS21705 (NUH87_21705) - 4755453..4755668 (+) 216 WP_338522618.1 hypothetical protein -
  NUH87_RS21710 (NUH87_21710) yacG 4755680..4755883 (-) 204 WP_040071046.1 DNA gyrase inhibitor YacG -
  NUH87_RS21715 (NUH87_21715) coaE 4755880..4756503 (-) 624 WP_338522619.1 dephospho-CoA kinase -
  NUH87_RS21720 (NUH87_21720) pilD 4756500..4757372 (-) 873 WP_338522620.1 A24 family peptidase Machinery gene
  NUH87_RS21725 (NUH87_21725) pilC 4757376..4758593 (-) 1218 WP_338522621.1 type II secretion system F family protein Machinery gene
  NUH87_RS21730 (NUH87_21730) pilB 4758597..4760297 (-) 1701 WP_338522622.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NUH87_RS21735 (NUH87_21735) pilA2 4760524..4760925 (+) 402 WP_338522623.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NUH87_RS21740 (NUH87_21740) - 4761046..4762692 (+) 1647 WP_338522625.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44451.47 Da        Isoelectric Point: 10.1096

>NTDB_id=934001 NUH87_RS21725 WP_338522621.1 4757376..4758593(-) (pilC) [Pseudomonas batumici strain Koz11]
MATKAVKVSLYAWEGTDKKGNKMSGELTGHNPALVKAQLRKQGINPGKVRKKSNSIFSKGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPNMRKLVDDIKQEVAAGNSFATSLRKKPEYFDDLYCNLVDAGEQAGALESLLERVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSGILLIKVVPQFQTIFKSFGAELPAFTLMVIGLSNIVQEWWWIIIVALVAAIYCLR
RAHKTSERFRNWMDRTLLKFPIIGGLLYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNVIFRNAVHRIKQDVSTGM
QLNFSMRATGVFPSMAIQMTAIGEESGALDAMLDKVATYYEGEVDNMVDSLTTLMEPIIMAVLGVIVGGLVIAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=934001 NUH87_RS21725 WP_338522621.1 4757376..4758593(-) (pilC) [Pseudomonas batumici strain Koz11]
ATGGCGACCAAAGCAGTCAAAGTCAGCCTTTATGCCTGGGAAGGGACCGACAAGAAGGGTAATAAAATGTCCGGTGAACT
CACCGGCCATAACCCGGCACTGGTCAAAGCACAACTGCGCAAGCAAGGCATCAACCCGGGCAAAGTGCGGAAAAAAAGCA
ACTCGATCTTCAGCAAGGGCAAGCGCATCAAGCCCTTGGACATTGCCCTGTTCACCCGCCAGATGGCGACGATGATGAAA
GCTGGTGTGCCGTTGCTGCAGTCCTTCGACATCATCGGCGAGGGCTTCGAGAATCCGAACATGCGCAAGCTGGTGGACGA
TATCAAGCAGGAAGTCGCCGCCGGCAACAGCTTCGCGACATCCTTGCGTAAGAAGCCGGAATATTTCGATGATTTGTACT
GCAACCTGGTGGATGCGGGCGAACAGGCAGGCGCACTGGAAAGCCTGCTGGAGCGGGTTGCGACCTACAAGGAGAAAACC
GAAGCCCTGAAAGCCAAGATCAAGAAGGCGATGAACTACCCTATTGCCGTCGTGCTCGTGGCGATTATCGTTTCTGGGAT
TCTGCTAATCAAAGTCGTTCCGCAGTTCCAGACGATCTTCAAGAGTTTTGGCGCGGAGCTTCCGGCCTTCACCCTGATGG
TGATAGGGCTCTCCAACATCGTGCAAGAGTGGTGGTGGATCATTATTGTGGCGCTGGTTGCAGCTATCTATTGCCTGAGA
CGGGCACACAAGACATCCGAGCGCTTTCGCAACTGGATGGACAGAACACTGCTGAAGTTCCCGATCATCGGTGGGCTGCT
GTATAAATCCGCCGTGGCACGCTACGCCCGCACCCTCTCGACAACCTTCGCCGCCGGCGTGCCACTGGTTGAAGCCCTCG
ATTCCGTGGCCGGTGCCACCGGTAATGTGATCTTCAGAAATGCGGTCCACCGTATCAAGCAGGACGTTTCTACTGGTATG
CAGTTGAACTTCTCCATGCGGGCGACCGGAGTATTCCCGAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCCGG
CGCCCTGGACGCTATGCTCGACAAGGTCGCGACCTACTACGAGGGCGAAGTCGATAACATGGTCGACAGCCTCACCACCC
TGATGGAACCCATCATCATGGCTGTGCTCGGCGTCATCGTCGGCGGCCTGGTGATCGCCATGTACCTGCCCATTTTCAAG
CTTGGCCAAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.778

100

0.778
  pilC Acinetobacter baylyi ADP1

59.559

100

0.6
  pilC Acinetobacter baumannii D1279779

59.901

99.753

0.598
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilC Vibrio cholerae strain A1552

43.704

100

0.437
  pilG Neisseria gonorrhoeae MS11

43.532

99.259

0.432
  pilG Neisseria meningitidis 44/76-A

43.532

99.259

0.432
  pilC Vibrio campbellii strain DS40M4

41.626

100

0.417
  pilC Thermus thermophilus HB27

37.406

99.012

0.37