Detailed information NTG0934000

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NUH87_RS21720
• Genome accession: NZ_CP144470
• Coordinates: 4756500..4757372 (-)
• Length: 290 a.a.
• NCBI ID: WP_338522620.1
• Uniprot ID: -
• Organism: Pseudomonas batumici strain Koz11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4751500..4762372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUH87_RS21685 (NUH87_21685)	-	4752320..4753618 (-)	1299	WP_338522615.1	NAD(P)/FAD-dependent oxidoreductase	-
NUH87_RS21690 (NUH87_21690)	-	4753682..4753855 (-)	174	WP_338522616.1	DUF3094 family protein	-
NUH87_RS21695 (NUH87_21695)	-	4753923..4754549 (-)	627	WP_040071051.1	DUF1780 domain-containing protein	-
NUH87_RS21700 (NUH87_21700)	-	4754704..4755390 (+)	687	WP_338522617.1	energy-coupling factor ABC transporter permease	-
NUH87_RS21705 (NUH87_21705)	-	4755453..4755668 (+)	216	WP_338522618.1	hypothetical protein	-
NUH87_RS21710 (NUH87_21710)	yacG	4755680..4755883 (-)	204	WP_040071046.1	DNA gyrase inhibitor YacG	-
NUH87_RS21715 (NUH87_21715)	coaE	4755880..4756503 (-)	624	WP_338522619.1	dephospho-CoA kinase	-
NUH87_RS21720 (NUH87_21720)	pilD	4756500..4757372 (-)	873	WP_338522620.1	A24 family peptidase	Machinery gene
NUH87_RS21725 (NUH87_21725)	pilC	4757376..4758593 (-)	1218	WP_338522621.1	type II secretion system F family protein	Machinery gene
NUH87_RS21730 (NUH87_21730)	pilB	4758597..4760297 (-)	1701	WP_338522622.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NUH87_RS21735 (NUH87_21735)	pilA2	4760524..4760925 (+)	402	WP_338522623.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31809.84 Da
• Isoelectric Point: 8.6246

>NTDB_id=934000 NUH87_RS21720 WP_338522620.1 4756500..4757372(-) (pilD) [Pseudomonas batumici strain Koz11]
MPLPDFLASNPLAFVAFALLLGLIVGSFLNVVIWRLPKMLERDWRTQAHEVLGLPQPAPGPTYNLILPHSHCPHCNHQIR
AWENLPLISYALLRGKCSSCKAPIGKRYPLTELACGLLSAFVAWHFGFGWPAGLMLVLSWGLLAMSLIDADHQLLPDALV
LPLLWLGLIANHFGLFTSLDNALWGAVAGYLSLWSVYWLFKLLTGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLILLRLRNAQTSTPIPFGPYLAIAGWIALLWGGQITTSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=934000 NUH87_RS21720 WP_338522620.1 4756500..4757372(-) (pilD) [Pseudomonas batumici strain Koz11]
ATGCCCCTACCCGACTTCCTGGCCAGCAACCCGCTGGCCTTCGTTGCATTCGCCCTGCTCCTCGGCCTGATCGTCGGCAG
TTTCCTCAACGTCGTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCACCCAGGCCCACGAAGTCCTCGGCC
TGCCCCAACCCGCGCCCGGCCCGACCTACAACCTGATACTGCCCCACTCCCATTGCCCGCACTGCAATCACCAGATCCGC
GCCTGGGAAAATCTCCCGCTGATCAGCTACGCCCTGCTGCGCGGCAAATGCTCCAGCTGCAAGGCCCCCATCGGCAAACG
CTATCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCCTTTGTCGCCTGGCATTTCGGTTTCGGCTGGCCCGCCGGCC
TGATGCTGGTGCTGAGCTGGGGCCTGTTGGCCATGAGCCTGATCGACGCCGATCACCAACTGCTGCCTGACGCCCTGGTC
CTGCCGCTGCTCTGGCTCGGCCTGATCGCCAACCACTTCGGCCTCTTCACCAGCCTGGACAACGCCCTGTGGGGTGCCGT
GGCCGGCTACCTGAGCCTCTGGTCCGTCTACTGGCTGTTCAAGCTGCTCACCGGTAAGGAAGGCATGGGCCATGGCGACT
TCAAGCTGCTGGCAATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCATCCCTGGTGGGC
GCCGTGCTTGGCCTGATTCTGCTGCGCCTGCGCAACGCCCAGACCTCGACCCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.396	95.862	0.531
pilD	Vibrio campbellii strain DS40M4	54.317	95.862	0.521
pilD	Acinetobacter nosocomialis M2	50.714	96.552	0.49
pilD	Acinetobacter baumannii D1279779	50.714	96.552	0.49
pilD	Neisseria gonorrhoeae MS11	49.63	93.103	0.462