Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | MWM02_RS01505 | Genome accession | NZ_AP025627 |
| Coordinates | 293839..294183 (+) | Length | 114 a.a. |
| NCBI ID | WP_244403583.1 | Uniprot ID | - |
| Organism | Parageobacillus sp. KH3-4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 288839..299183
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM02_RS01480 (PspKH34_02580) | - | 289135..289578 (+) | 444 | WP_064552256.1 | DUF1284 domain-containing protein | - |
| MWM02_RS01485 (PspKH34_02590) | - | 289840..291216 (+) | 1377 | WP_244402793.1 | aspartate kinase | - |
| MWM02_RS01490 (PspKH34_02600) | - | 291475..292440 (+) | 966 | WP_244402794.1 | processed acidic surface protein | - |
| MWM02_RS01495 (PspKH34_02610) | - | 292446..293054 (+) | 609 | WP_064552253.1 | class D sortase | - |
| MWM02_RS01500 (PspKH34_02620) | - | 293065..293526 (-) | 462 | WP_064552252.1 | YwpF-like family protein | - |
| MWM02_RS01505 (PspKH34_02630) | ssbB | 293839..294183 (+) | 345 | WP_244403583.1 | single-stranded DNA-binding protein | Machinery gene |
| MWM02_RS01510 (PspKH34_02640) | - | 294377..294787 (-) | 411 | WP_064552251.1 | helix-turn-helix transcriptional regulator | - |
| MWM02_RS01515 (PspKH34_02650) | - | 294993..295490 (+) | 498 | WP_064552250.1 | hypothetical protein | - |
| MWM02_RS01520 (PspKH34_02660) | - | 296244..297605 (+) | 1362 | WP_244402795.1 | peptidoglycan-binding protein | - |
| MWM02_RS01525 (PspKH34_02670) | wecB | 297947..299092 (+) | 1146 | WP_244402796.1 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12778.56 Da Isoelectric Point: 9.1223
>NTDB_id=93274 MWM02_RS01505 WP_244403583.1 293839..294183(+) (ssbB) [Parageobacillus sp. KH3-4]
MINQVVLVGRLTKDPELRYTADGAAVANVTLAVTRNFRNAEGGIDTDFVQCTLWRKVAENTANYCRKGSIIGVMGRIQTR
SYEKKDGQRVFVTEVVAESVRFMGGKTHEWIEHS
MINQVVLVGRLTKDPELRYTADGAAVANVTLAVTRNFRNAEGGIDTDFVQCTLWRKVAENTANYCRKGSIIGVMGRIQTR
SYEKKDGQRVFVTEVVAESVRFMGGKTHEWIEHS
Nucleotide
Download Length: 345 bp
>NTDB_id=93274 MWM02_RS01505 WP_244403583.1 293839..294183(+) (ssbB) [Parageobacillus sp. KH3-4]
ATGATCAACCAAGTCGTGCTCGTCGGCCGGCTGACAAAAGATCCAGAACTTCGATATACCGCCGATGGAGCCGCGGTCGC
TAACGTCACATTAGCGGTGACAAGAAATTTTCGCAATGCGGAAGGGGGAATTGACACCGATTTCGTTCAATGCACACTCT
GGCGAAAAGTGGCGGAGAACACGGCGAATTATTGCCGGAAAGGTTCGATTATTGGCGTCATGGGGCGAATTCAAACGAGA
AGCTATGAAAAGAAAGACGGACAGCGGGTGTTTGTGACGGAAGTGGTAGCCGAATCCGTGCGATTTATGGGCGGCAAAAC
GCACGAATGGATCGAACATTCATAG
ATGATCAACCAAGTCGTGCTCGTCGGCCGGCTGACAAAAGATCCAGAACTTCGATATACCGCCGATGGAGCCGCGGTCGC
TAACGTCACATTAGCGGTGACAAGAAATTTTCGCAATGCGGAAGGGGGAATTGACACCGATTTCGTTCAATGCACACTCT
GGCGAAAAGTGGCGGAGAACACGGCGAATTATTGCCGGAAAGGTTCGATTATTGGCGTCATGGGGCGAATTCAAACGAGA
AGCTATGAAAAGAAAGACGGACAGCGGGTGTTTGTGACGGAAGTGGTAGCCGAATCCGTGCGATTTATGGGCGGCAAAAC
GCACGAATGGATCGAACATTCATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
68.807 |
95.614 |
0.658 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
63.551 |
93.86 |
0.596 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.075 |
93.86 |
0.526 |
| ssbA | Streptococcus mutans UA159 |
42.593 |
94.737 |
0.404 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.689 |
90.351 |
0.395 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.741 |
94.737 |
0.386 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.741 |
94.737 |
0.386 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.815 |
94.737 |
0.377 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.815 |
94.737 |
0.377 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.815 |
94.737 |
0.377 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.815 |
94.737 |
0.377 |
| ssb | Vibrio cholerae strain A1552 |
36.522 |
100 |
0.368 |