Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | MWM03_RS17795 | Genome accession | NZ_AP025625 |
| Coordinates | 3513304..3513651 (-) | Length | 115 a.a. |
| NCBI ID | WP_244380377.1 | Uniprot ID | - |
| Organism | Saccharococcus caldoxylosilyticus strain KH3-5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3469181..3538245 | 3513304..3513651 | within | 0 |
Gene organization within MGE regions
Location: 3469181..3538245
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM03_RS17615 (PcaKH35_34330) | - | 3469181..3469864 (+) | 684 | WP_042408164.1 | glycosyltransferase family 2 protein | - |
| MWM03_RS17620 (PcaKH35_34340) | - | 3469886..3470254 (+) | 369 | WP_017436417.1 | DUF2304 domain-containing protein | - |
| MWM03_RS17625 (PcaKH35_34350) | - | 3470241..3470609 (+) | 369 | WP_017436418.1 | EamA family transporter | - |
| MWM03_RS17630 (PcaKH35_34360) | - | 3470628..3471887 (+) | 1260 | WP_061579113.1 | ArnT family glycosyltransferase | - |
| MWM03_RS17635 | - | 3471957..3472181 (+) | 225 | WP_153018005.1 | hypothetical protein | - |
| MWM03_RS17640 (PcaKH35_34370) | - | 3472423..3473742 (+) | 1320 | WP_061579115.1 | processed acidic surface protein | - |
| MWM03_RS17645 (PcaKH35_34380) | - | 3473744..3474337 (+) | 594 | WP_061579116.1 | class D sortase | - |
| MWM03_RS17650 (PcaKH35_34390) | - | 3474730..3475938 (-) | 1209 | WP_244380351.1 | polysaccharide deacetylase family protein | - |
| MWM03_RS17655 (PcaKH35_34400) | - | 3476191..3476850 (+) | 660 | WP_017436424.1 | hypothetical protein | - |
| MWM03_RS17660 (PcaKH35_34410) | - | 3476869..3478053 (+) | 1185 | WP_244380352.1 | efflux RND transporter periplasmic adaptor subunit | - |
| MWM03_RS17665 (PcaKH35_34420) | - | 3478447..3478881 (-) | 435 | WP_218687172.1 | hypothetical protein | - |
| MWM03_RS17670 (PcaKH35_34440) | - | 3479188..3479379 (-) | 192 | WP_244380353.1 | hypothetical protein | - |
| MWM03_RS17675 (PcaKH35_34450) | - | 3479394..3479903 (-) | 510 | WP_244380355.1 | RadC family protein | - |
| MWM03_RS17680 (PcaKH35_34460) | - | 3480032..3481600 (-) | 1569 | WP_218687463.1 | IS1182 family transposase | - |
| MWM03_RS17685 (PcaKH35_34470) | - | 3481871..3482953 (-) | 1083 | WP_244380357.1 | hypothetical protein | - |
| MWM03_RS17690 (PcaKH35_34480) | - | 3482916..3484493 (-) | 1578 | WP_244380358.1 | S-layer homology domain-containing protein | - |
| MWM03_RS17695 (PcaKH35_34490) | - | 3484998..3485294 (+) | 297 | WP_042409082.1 | transposase | - |
| MWM03_RS17700 (PcaKH35_34500) | - | 3485303..3486184 (+) | 882 | WP_244380062.1 | IS3 family transposase | - |
| MWM03_RS17705 (PcaKH35_34510) | - | 3486227..3487630 (-) | 1404 | WP_244380359.1 | O-antigen ligase family protein | - |
| MWM03_RS17710 (PcaKH35_34520) | - | 3487669..3488778 (-) | 1110 | WP_017436433.1 | glycosyltransferase family 4 protein | - |
| MWM03_RS17715 (PcaKH35_34530) | - | 3488835..3489560 (-) | 726 | WP_017436434.1 | WecB/TagA/CpsF family glycosyltransferase | - |
| MWM03_RS17720 (PcaKH35_34540) | - | 3489585..3490859 (-) | 1275 | WP_017436435.1 | nucleotide sugar dehydrogenase | - |
| MWM03_RS17725 (PcaKH35_34550) | csaB | 3491084..3492196 (+) | 1113 | WP_042408269.1 | polysaccharide pyruvyl transferase CsaB | - |
| MWM03_RS17730 (PcaKH35_34560) | - | 3492220..3493392 (+) | 1173 | WP_081161562.1 | glycosyltransferase family 4 protein | - |
| MWM03_RS17735 (PcaKH35_34570) | murJ | 3493461..3494984 (+) | 1524 | WP_244380360.1 | murein biosynthesis integral membrane protein MurJ | - |
| MWM03_RS17740 (PcaKH35_34580) | - | 3495019..3496902 (-) | 1884 | WP_244380361.1 | S-layer homology domain-containing protein | - |
| MWM03_RS17745 (PcaKH35_34590) | - | 3497181..3498185 (-) | 1005 | WP_244380362.1 | C40 family peptidase | - |
| MWM03_RS17750 (PcaKH35_34600) | - | 3498398..3502075 (+) | 3678 | WP_244380364.1 | S8 family peptidase | - |
| MWM03_RS17755 (PcaKH35_34610) | - | 3502219..3503787 (+) | 1569 | WP_218687463.1 | IS1182 family transposase | - |
| MWM03_RS17760 (PcaKH35_34620) | - | 3503894..3505813 (-) | 1920 | WP_244380365.1 | S8 family serine peptidase | - |
| MWM03_RS17765 (PcaKH35_34630) | - | 3505893..3507299 (-) | 1407 | WP_244380366.1 | N-acetylmuramoyl-L-alanine amidase | - |
| MWM03_RS17770 (PcaKH35_34650) | - | 3508133..3508450 (-) | 318 | WP_244380368.1 | hypothetical protein | - |
| MWM03_RS17775 (PcaKH35_34660) | wecB | 3508633..3509778 (-) | 1146 | WP_244380370.1 | non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase | - |
| MWM03_RS17780 (PcaKH35_34670) | - | 3510193..3511503 (-) | 1311 | WP_409993689.1 | peptidoglycan-binding protein | - |
| MWM03_RS17785 (PcaKH35_34680) | - | 3512007..3512507 (-) | 501 | WP_244380374.1 | hypothetical protein | - |
| MWM03_RS17790 (PcaKH35_34690) | - | 3512718..3513129 (+) | 412 | Protein_3479 | helix-turn-helix domain-containing protein | - |
| MWM03_RS17795 (PcaKH35_34700) | ssbB | 3513304..3513651 (-) | 348 | WP_244380377.1 | single-stranded DNA-binding protein | Machinery gene |
| MWM03_RS17800 (PcaKH35_34710) | - | 3513995..3514447 (+) | 453 | WP_042408222.1 | YwpF-like family protein | - |
| MWM03_RS17805 (PcaKH35_34720) | - | 3514471..3515058 (-) | 588 | WP_042408225.1 | class D sortase | - |
| MWM03_RS17810 (PcaKH35_34730) | - | 3515065..3516030 (-) | 966 | WP_042408227.1 | processed acidic surface protein | - |
| MWM03_RS17815 (PcaKH35_34740) | - | 3516164..3517543 (-) | 1380 | WP_042408272.1 | aspartate kinase | - |
| MWM03_RS17820 (PcaKH35_34750) | - | 3517649..3518092 (-) | 444 | WP_042408230.1 | DUF1284 domain-containing protein | - |
| MWM03_RS17825 (PcaKH35_34760) | - | 3518181..3518795 (+) | 615 | WP_174407478.1 | hypothetical protein | - |
| MWM03_RS17830 (PcaKH35_34770) | adh | 3518967..3520487 (+) | 1521 | WP_017436460.1 | aldehyde dehydrogenase | - |
| MWM03_RS17835 (PcaKH35_34780) | - | 3520562..3520906 (+) | 345 | WP_026078575.1 | DUF779 domain-containing protein | - |
| MWM03_RS17840 (PcaKH35_34790) | - | 3521146..3522765 (-) | 1620 | WP_244380378.1 | MDR family MFS transporter | - |
| MWM03_RS17845 (PcaKH35_34800) | - | 3522750..3523688 (-) | 939 | WP_244380379.1 | TetR/AcrR family transcriptional regulator | - |
| MWM03_RS17850 (PcaKH35_34820) | - | 3524221..3524961 (-) | 741 | WP_244380380.1 | MBL fold metallo-hydrolase | - |
| MWM03_RS17855 (PcaKH35_34830) | - | 3525331..3526206 (-) | 876 | WP_244380382.1 | ROK family protein | - |
| MWM03_RS17860 (PcaKH35_34840) | ssuE | 3526864..3527401 (+) | 538 | Protein_3493 | NADPH-dependent FMN reductase | - |
| MWM03_RS17865 (PcaKH35_34850) | - | 3527528..3528835 (+) | 1308 | WP_244380383.1 | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein | - |
| MWM03_RS17870 (PcaKH35_34860) | - | 3528908..3529810 (+) | 903 | WP_244380384.1 | LysR family transcriptional regulator | - |
| MWM03_RS17875 (PcaKH35_34870) | - | 3529953..3530312 (+) | 360 | WP_244380385.1 | hypothetical protein | - |
| MWM03_RS17880 (PcaKH35_34880) | - | 3530363..3531142 (+) | 780 | WP_244380386.1 | ATP-binding cassette domain-containing protein | - |
| MWM03_RS17885 (PcaKH35_34890) | - | 3531249..3532364 (+) | 1116 | WP_244380387.1 | LLM class flavin-dependent oxidoreductase | - |
| MWM03_RS17890 (PcaKH35_34900) | - | 3532434..3533396 (+) | 963 | WP_244380388.1 | aliphatic sulfonate ABC transporter substrate-binding protein | - |
| MWM03_RS17895 (PcaKH35_34910) | - | 3533427..3534203 (+) | 777 | WP_244380389.1 | ABC transporter permease subunit | - |
| MWM03_RS17900 (PcaKH35_34920) | - | 3534232..3535566 (+) | 1335 | WP_244380390.1 | LLM class flavin-dependent oxidoreductase | - |
| MWM03_RS17905 (PcaKH35_34940) | - | 3535912..3537126 (+) | 1215 | WP_244380391.1 | acyl-CoA dehydrogenase family protein | - |
| MWM03_RS17910 (PcaKH35_34950) | - | 3537232..3538245 (+) | 1014 | WP_244380392.1 | methionine ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 115 a.a. Molecular weight: 12969.69 Da Isoelectric Point: 9.0791
>NTDB_id=93260 MWM03_RS17795 WP_244380377.1 3513304..3513651(-) (ssbB) [Saccharococcus caldoxylosilyticus strain KH3-5]
MINQVVLVGRLTKDPELRYTADGAAVANITLAVARNFRNAEGRVDTDFVPCVLWRKTAENTANYCRKGSMIAVTGRVQTR
NYENKDGQRVYVTEVVAESVRFISTSKVNEWFEHA
MINQVVLVGRLTKDPELRYTADGAAVANITLAVARNFRNAEGRVDTDFVPCVLWRKTAENTANYCRKGSMIAVTGRVQTR
NYENKDGQRVYVTEVVAESVRFISTSKVNEWFEHA
Nucleotide
Download Length: 348 bp
>NTDB_id=93260 MWM03_RS17795 WP_244380377.1 3513304..3513651(-) (ssbB) [Saccharococcus caldoxylosilyticus strain KH3-5]
ATGATTAATCAAGTGGTGCTCGTCGGCCGGTTAACGAAAGATCCGGAACTTCGCTATACCGCCGATGGAGCAGCAGTCGC
TAACATTACGTTAGCAGTAGCAAGAAATTTCCGCAATGCAGAAGGGAGGGTAGATACTGATTTCGTCCCGTGCGTCCTTT
GGCGAAAGACAGCAGAAAACACGGCCAATTATTGCCGAAAAGGCTCGATGATTGCGGTGACGGGACGGGTCCAAACGCGA
AACTATGAAAACAAAGACGGACAGCGTGTCTATGTCACTGAGGTAGTAGCGGAATCTGTCCGCTTTATCAGCACCAGCAA
AGTGAATGAATGGTTCGAGCATGCCTGA
ATGATTAATCAAGTGGTGCTCGTCGGCCGGTTAACGAAAGATCCGGAACTTCGCTATACCGCCGATGGAGCAGCAGTCGC
TAACATTACGTTAGCAGTAGCAAGAAATTTCCGCAATGCAGAAGGGAGGGTAGATACTGATTTCGTCCCGTGCGTCCTTT
GGCGAAAGACAGCAGAAAACACGGCCAATTATTGCCGAAAAGGCTCGATGATTGCGGTGACGGGACGGGTCCAAACGCGA
AACTATGAAAACAAAGACGGACAGCGTGTCTATGTCACTGAGGTAGTAGCGGAATCTGTCCGCTTTATCAGCACCAGCAA
AGTGAATGAATGGTTCGAGCATGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
66.99 |
89.565 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
66.019 |
89.565 |
0.591 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.273 |
95.652 |
0.548 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.762 |
91.304 |
0.409 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.81 |
91.304 |
0.4 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.81 |
91.304 |
0.4 |
| ssbA | Streptococcus mutans UA159 |
42.857 |
91.304 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.857 |
91.304 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.857 |
91.304 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.857 |
91.304 |
0.391 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.857 |
91.304 |
0.391 |
| ssb | Vibrio cholerae strain A1552 |
40 |
91.304 |
0.365 |