Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VXF94_RS13160 Genome accession   NZ_CP143956
Coordinates   2579103..2579444 (+) Length   113 a.a.
NCBI ID   WP_013353870.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2574103..2584444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS13125 (VXF94_13125) - 2574232..2575029 (+) 798 WP_013353876.1 flagellar hook-basal body protein -
  VXF94_RS13130 (VXF94_13130) - 2575054..2575875 (+) 822 WP_013353875.1 flagellar hook-basal body protein -
  VXF94_RS13135 (VXF94_13135) - 2575893..2576957 (-) 1065 WP_014472331.1 tetratricopeptide repeat protein -
  VXF94_RS13140 (VXF94_13140) fabZ 2577152..2577577 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  VXF94_RS13145 (VXF94_13145) mscL 2577633..2578028 (+) 396 WP_013353873.1 large conductance mechanosensitive channel protein MscL -
  VXF94_RS13150 (VXF94_13150) - 2578074..2578484 (-) 411 WP_013353872.1 YwpF-like family protein -
  VXF94_RS13155 (VXF94_13155) - 2578656..2579006 (+) 351 WP_013353871.1 hypothetical protein -
  VXF94_RS13160 (VXF94_13160) ssbB 2579103..2579444 (+) 342 WP_013353870.1 single-stranded DNA-binding protein Machinery gene
  VXF94_RS13165 (VXF94_13165) - 2579653..2580435 (+) 783 WP_013353869.1 DeoR/GlpR family DNA-binding transcription regulator -
  VXF94_RS13170 (VXF94_13170) - 2580432..2581289 (+) 858 WP_014471137.1 Cof-type HAD-IIB family hydrolase -
  VXF94_RS13175 (VXF94_13175) - 2581402..2584176 (-) 2775 WP_014471136.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12604.48 Da        Isoelectric Point: 9.5812

>NTDB_id=932217 VXF94_RS13160 WP_013353870.1 2579103..2579444(+) (ssbB) [Bacillus amyloliquefaciens strain Fad 108]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVSRNFKSASGETGADFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=932217 VXF94_RS13160 WP_013353870.1 2579103..2579444(+) (ssbB) [Bacillus amyloliquefaciens strain Fad 108]
TTGTTTAACCACGTTATGCTTGTCGGACGGCTGACGAAAGATCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
TCATATTACCTTGGCGGTGAGCCGCAATTTTAAAAGCGCGTCGGGCGAAACCGGTGCTGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCGCTGTACTGCCAAAAAGGGTCAATGGTCGGTGTTAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTCTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.991

100

0.77
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372