NTDB

Overview

Name	comGC/cglC	Type	Machinery gene
Locus tag	V2I06_RS06485	Genome accession	NZ_CP143584
Coordinates	1376906..1377181 (+)	Length	91 a.a.
NCBI ID	WP_002380445.1	Uniprot ID	-
Organism	Enterococcus faecalis strain IDRL-7538
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1371906..1382181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V2I06_RS06465	rlmN	1372003..1373076 (+)	1074	WP_002356987.1	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	-
V2I06_RS06470	-	1373366..1374694 (+)	1329	WP_002362058.1	APC family permease	-
V2I06_RS06475	comGA	1374935..1375903 (+)	969	WP_002364362.1	competence type IV pilus ATPase ComGA	-
V2I06_RS06480	comGB	1375860..1376906 (+)	1047	WP_002369171.1	competence type IV pilus assembly protein ComGB	-
V2I06_RS06485	comGC/cglC	1376906..1377181 (+)	276	WP_002380445.1	competence type IV pilus major pilin ComGC	Machinery gene
V2I06_RS06490	comGD	1377178..1377624 (+)	447	WP_002379576.1	competence type IV pilus minor pilin ComGD	-
V2I06_RS06495	-	1377590..1377916 (+)	327	WP_010774640.1	type II secretion system protein	-
V2I06_RS06500	comGF	1377906..1378340 (+)	435	WP_002357060.1	competence type IV pilus minor pilin ComGF	-
V2I06_RS06505	comGG	1378340..1378693 (+)	354	WP_002362054.1	competence type IV pilus minor pilin ComGG	-
V2I06_RS06510	-	1378822..1379829 (+)	1008	WP_002380426.1	class I SAM-dependent methyltransferase	-
V2I06_RS06515	-	1379854..1381041 (+)	1188	WP_002357064.1	acetate/propionate family kinase	-
V2I06_RS06520	-	1381153..1381626 (-)	474	WP_002357065.1	universal stress protein	-

Sequence

Protein

Download Length: 91 a.a. Molecular weight: 10465.36 Da Isoelectric Point: 7.0118

                                >NTDB_id=929895 V2I06_RS06485 WP_002380445.1 1376906..1377181(+) (comGC/cglC) [Enterococcus faecalis strain IDRL-7538]

MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDEKGNEAIVKIVESQIELYTLEKNKTPSLNELVNEGYITK

EQLDKYTAEKQ

Nucleotide

Download Length: 276 bp

                                >NTDB_id=929895 V2I06_RS06485 WP_002380445.1 1376906..1377181(+) (comGC/cglC) [Enterococcus faecalis strain IDRL-7538]

ATGAAAAAGAAACAAAAATACGCAGGGTTTACATTATTAGAAATGTTGATTGTCTTATTGATTATTTCCGTATTGATTTT

ACTTTTTGTTCCTAACTTAGCGAAACATAAAGAAACAGTTGATGAAAAAGGCAATGAAGCAATCGTAAAAATTGTAGAAT

CACAAATCGAGCTCTACACACTAGAAAAAAATAAGACGCCTTCCTTAAATGAATTAGTCAACGAAGGCTACATTACTAAA

GAGCAGTTAGATAAATATACAGCAGAAAAGCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGC/cglC	Streptococcus pneumoniae Rx1	63.095	92.308	0.582
comGC/cglC	Streptococcus pneumoniae D39	63.095	92.308	0.582
comGC/cglC	Streptococcus pneumoniae R6	63.095	92.308	0.582
comGC/cglC	Streptococcus pneumoniae TIGR4	63.095	92.308	0.582
comGC/cglC	Streptococcus mitis NCTC 12261	61.905	92.308	0.571
comGC/cglC	Streptococcus mitis SK321	61.176	93.407	0.571
comGC	Lactococcus lactis subsp. cremoris KW2	56.977	94.505	0.538
comYC	Streptococcus gordonii str. Challis substr. CH1	56.322	95.604	0.538
comYC	Streptococcus mutans UA140	57.692	85.714	0.495
comYC	Streptococcus mutans UA159	57.692	85.714	0.495
comYC	Streptococcus suis isolate S10	51.163	94.505	0.484
comGC	Latilactobacillus sakei subsp. sakei 23K	45.055	100	0.451
comGC	Staphylococcus aureus MW2	46.835	86.813	0.407
comGC	Staphylococcus aureus N315	46.835	86.813	0.407
comGC	Bacillus subtilis subsp. subtilis str. 168	47.297	81.319	0.385

Detailed information NTG0929895