Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   AB5J50_RS28475 Genome accession   NZ_CP163440
Coordinates   6262895..6264019 (-) Length   374 a.a.
NCBI ID   WP_369261082.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 6257895..6269019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS28450 (AB5J50_28450) cseB 6258426..6259133 (-) 708 WP_369261079.1 two-component system response regulator CseB -
  AB5J50_RS28455 (AB5J50_28455) - 6259153..6259800 (-) 648 WP_327430644.1 hypothetical protein -
  AB5J50_RS28460 (AB5J50_28460) - 6259788..6260339 (-) 552 WP_327430645.1 SigE family RNA polymerase sigma factor -
  AB5J50_RS28465 (AB5J50_28465) - 6260602..6261522 (-) 921 WP_369261080.1 A/G-specific adenine glycosylase -
  AB5J50_RS28470 (AB5J50_28470) - 6261895..6262704 (+) 810 WP_369261081.1 hypothetical protein -
  AB5J50_RS28475 (AB5J50_28475) disA 6262895..6264019 (-) 1125 WP_369261082.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J50_RS28480 (AB5J50_28480) radA/sms 6264088..6265497 (-) 1410 WP_327430649.1 DNA repair protein RadA Machinery gene
  AB5J50_RS28485 (AB5J50_28485) - 6265694..6267460 (+) 1767 WP_369261083.1 hypothetical protein -
  AB5J50_RS28490 (AB5J50_28490) - 6267581..6268441 (-) 861 WP_327430651.1 hypothetical protein -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40240.01 Da        Isoelectric Point: 4.9338

>NTDB_id=925356 AB5J50_RS28475 WP_369261082.1 6262895..6264019(-) (disA) [Streptomyces sp. R35]
MAANDRAAAPGKSGGSSGADGLMRASLSAVAPGTALRDGLERILRGNTGGLIVLGWDKTVESMCTGGFVLDVEFTATRLR
ELCKLDGGIVIDKDITKILRAGVQLVPDPKIPTEETGTRHRTADRVSKQVDFPVVSVSQSMRLIALYVDGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALSELDALSHAELLELSTVARALGYTGSPEALDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=925356 AB5J50_RS28475 WP_369261082.1 6262895..6264019(-) (disA) [Streptomyces sp. R35]
GTGGCAGCCAACGACCGGGCAGCAGCTCCCGGAAAATCCGGTGGGAGCTCCGGTGCCGATGGCCTGATGCGCGCCTCACT
GAGCGCCGTGGCACCCGGCACAGCCCTGCGCGACGGGCTCGAGCGGATTCTCCGTGGCAACACGGGCGGACTCATCGTGC
TCGGCTGGGACAAGACCGTCGAGTCGATGTGCACCGGCGGTTTCGTGCTGGACGTCGAGTTCACCGCGACCCGCCTGCGC
GAGCTGTGCAAGCTCGACGGCGGCATCGTCATCGACAAGGACATCACCAAGATTCTGCGGGCGGGCGTGCAGCTCGTGCC
CGACCCGAAGATCCCCACGGAGGAGACTGGCACGCGGCACCGCACCGCGGACCGGGTCTCCAAGCAGGTCGACTTCCCCG
TCGTCTCGGTCTCCCAGTCGATGCGCCTGATCGCGCTGTACGTCGACGGTCAGCGCCGCGTCCTGGAGGACTCGGCGGCG
ATCCTCTCCCGCGCCAACCAGGCCCTCGCGACCCTGGAGCGCTACAAACTCCGCCTCGACGAGGTCGCGGGAACGTTGTC
AGCGCTGGAGATCGAGGACCTCGTCACCGTCCGCGACGTGTCGGCTGTCGCCCAGCGCCTGGAGATGGTGCGGCGCATCG
CCACCGAGATCGCCGAGTACGTAGTCGAACTGGGCACCGACGGGCGTCTTCTCGCCCTCCAGCTGGACGAGTTGATCGCC
GGGGTCGAGCCCGAGCGCGAACTCGTCGTACGGGACTACGTGCCCGAGCCCACCGCCAAGCGCTCCCGCACGGTCGATGA
GGCTCTCTCCGAACTGGACGCGCTCAGCCACGCGGAGCTCCTCGAACTCTCCACCGTGGCACGGGCGCTGGGCTACACCG
GCTCCCCCGAGGCGCTGGATTCCGCCGTCTCCCCGCGCGGCTTCCGCCTCCTCGCCAAGGTGCCGCGCCTGCCCGGCGCG
ATCATCGACCGCCTTGTGGAGCACTTCGGCGGACTGCAGAAGCTGCTCGCCGCCAGCGTGGACGACCTGCAGACGGTCGA
CGGGGTGGGCGAGGCGCGAGCGCGCAGTGTCCGCGAGGGGCTGTCGCGGCTGGCGGAGTCGTCGATTCTGGAACGGTACG
TCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

44.875

96.524

0.433