Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VKP36_RS00660 Genome accession   NZ_CP142357
Coordinates   103792..104118 (+) Length   108 a.a.
NCBI ID   WP_011528161.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain AW-534     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98792..109118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP36_RS00645 (VKP36_00645) - 101424..101789 (+) 366 WP_002986560.1 DUF1033 family protein -
  VKP36_RS00650 (VKP36_00650) comYA 101882..102820 (+) 939 WP_129304381.1 competence type IV pilus ATPase ComGA Machinery gene
  VKP36_RS00655 (VKP36_00655) comYB 102756..103790 (+) 1035 WP_227868552.1 competence type IV pilus assembly protein ComGB Machinery gene
  VKP36_RS00660 (VKP36_00660) comYC 103792..104118 (+) 327 WP_011528161.1 competence type IV pilus major pilin ComGC Machinery gene
  VKP36_RS00665 (VKP36_00665) comGD 104093..104521 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  VKP36_RS00670 (VKP36_00670) comGE 104478..104762 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  VKP36_RS00675 (VKP36_00675) comYF 104755..105189 (+) 435 WP_326624919.1 competence type IV pilus minor pilin ComGF Machinery gene
  VKP36_RS00680 (VKP36_00680) comGG 105173..105499 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  VKP36_RS00685 (VKP36_00685) comYH 105597..106550 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  VKP36_RS00690 (VKP36_00690) - 106609..107805 (+) 1197 WP_030126459.1 acetate kinase -
  VKP36_RS00695 (VKP36_00695) - 107991..108299 (+) 309 WP_030126458.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12362.29 Da        Isoelectric Point: 9.6949

>NTDB_id=925356 VKP36_RS00660 WP_011528161.1 103792..104118(+) (comYC) [Streptococcus pyogenes strain AW-534]
MINQWNNLRHKNLKGFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKA
DGSITEKQEKAYQDYYDKHKNEKARLSN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=925356 VKP36_RS00660 WP_011528161.1 103792..104118(+) (comYC) [Streptococcus pyogenes strain AW-534]
ATGATTAATCAATGGAACAACTTACGACACAAGAATTTAAAAGGATTTACTCTTCTAGAAATGTTATTGGTGATTCTTGT
TATCAGTGTTTTGATGCTATTATTTGTGCCTAATTTAAGCAAGCAAAAAGACAGGGTTACAGAAACAGGTAATGCCGCTG
TTGTTAAATTAGTGGAGAATCAAGCAGAACTATATGAATTATCTCAAGGCTCAAAACCAAGTTTGAGCCAGTTAAAGGCA
GATGGTAGTATCACTGAGAAACAAGAAAAAGCTTATCAAGACTATTATGACAAACATAAAAATGAAAAAGCCCGTCTTAG
CAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

56.19

97.222

0.546
  comGC Lactococcus lactis subsp. cremoris KW2

55.882

94.444

0.528
  comGC/cglC Streptococcus mitis SK321

60.87

85.185

0.519
  comGC/cglC Streptococcus pneumoniae Rx1

59.783

85.185

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

59.783

85.185

0.509
  comGC/cglC Streptococcus pneumoniae D39

59.783

85.185

0.509
  comGC/cglC Streptococcus mitis NCTC 12261

59.783

85.185

0.509
  comGC/cglC Streptococcus pneumoniae R6

59.783

85.185

0.509
  comYC Streptococcus mutans UA159

52.475

93.519

0.491
  comYC Streptococcus mutans UA140

52.475

93.519

0.491
  comYC Streptococcus suis isolate S10

58.025

75

0.435